Information for 10-AATCCAATTA (Motif 14)

G T C A C G T A G A C T A T G C A G T C C G T A C G T A A C G T C A G T G C T A
Reverse Opposite:
C G A T G C T A C G T A A C G T A C G T A C T G A T C G C G T A A C G T A C G T
p-value:1e-11
log p-value:-2.669e+01
Information Content per bp:1.857
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.21%
Number of Background Sequences with motif23.0
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets68.5 +/- 15.9bp
Average Position of motif in Background48.8 +/- 29.8bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Phox2b/MA0681.1/Jaspar

Match Rank:1
Score:0.85
Offset:-1
Orientation:forward strand
Alignment:-AATCCAATTA
TAATTTAATTA
 A C G T G T C A C G T A G A C T A T G C A G T C C G T A C G T A A C G T C A G T G C T A
G C A T C T G A T C G A G A C T A G C T G A C T T C G A T C G A A G C T G C A T C G T A

PHOX2A/MA0713.1/Jaspar

Match Rank:2
Score:0.85
Offset:-1
Orientation:forward strand
Alignment:-AATCCAATTA
TAATTTAATTA
 A C G T G T C A C G T A G A C T A T G C A G T C C G T A C G T A A C G T C A G T G C T A
G C A T C T G A C T G A G A C T A G C T G A C T T C G A T C G A A G C T G C A T C G T A

MSX2/MA0708.1/Jaspar

Match Rank:3
Score:0.81
Offset:3
Orientation:forward strand
Alignment:AATCCAATTA-
---CCAATTAA
 G T C A C G T A G A C T A T G C A G T C C G T A C G T A A C G T C A G T G C T A A C G T
A C G T A C G T A C G T T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A

MSX1/MA0666.1/Jaspar

Match Rank:4
Score:0.80
Offset:3
Orientation:forward strand
Alignment:AATCCAATTA-
---CCAATTAG
 G T C A C G T A G A C T A T G C A G T C C G T A C G T A A C G T C A G T G C T A A C G T
A C G T A C G T A C G T A T G C G A T C T G C A G T C A A C G T A C G T T G C A T C A G

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:5
Score:0.80
Offset:-1
Orientation:reverse strand
Alignment:-AATCCAATTA-
TAATYNRATTAR
 A C G T G T C A C G T A G A C T A T G C A G T C C G T A C G T A A C G T C A G T G C T A A C G T
G C A T C G T A C G T A G A C T A G C T G C A T T C G A T C G A A C G T G A C T C G T A C T A G

Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer

Match Rank:6
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--AATCCAATTA
NTAATBNAATTA
 A C G T A C G T G T C A C G T A G A C T A T G C A G T C C G T A C G T A A C G T C A G T G C T A
G T A C G C A T C T G A C G T A G A C T A G C T C A T G T G C A C T G A A C G T G A C T C G T A

PH0006.1_Barhl2/Jaspar

Match Rank:7
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--AATCCAATTA----
AAAAACCAATTAAGAA
 A C G T A C G T G T C A C G T A G A C T A T G C A G T C C G T A C G T A A C G T C A G T G C T A A C G T A C G T A C G T A C G T
G T C A G T C A G T C A C T G A T C G A G A T C A G T C C T G A G C T A A C G T A C G T C G T A C T G A A T C G G C T A G C T A

PROP1/MA0715.1/Jaspar

Match Rank:8
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-AATCCAATTA
TAATTTAATTA
 A C G T G T C A C G T A G A C T A T G C A G T C C G T A C G T A A C G T C A G T G C T A
G C A T C G T A C T G A G C A T G A C T C G A T G T C A C T G A C G A T G A C T C G T A

Msx3/MA0709.1/Jaspar

Match Rank:9
Score:0.79
Offset:3
Orientation:forward strand
Alignment:AATCCAATTA-
---CCAATTAA
 G T C A C G T A G A C T A T G C A G T C C G T A C G T A A C G T C A G T G C T A A C G T
A C G T A C G T A C G T T A G C G A T C T C G A T G C A A C G T G A C T C G T A T C G A

PH0005.1_Barhl1/Jaspar

Match Rank:10
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--AATCCAATTA----
AACAACCAATTAATTC
 A C G T A C G T G T C A C G T A G A C T A T G C A G T C C G T A C G T A A C G T C A G T G C T A A C G T A C G T A C G T A C G T
G T C A C T G A G T A C T C G A C T G A A T G C G A T C C T G A G C T A A C G T G A C T C G T A C T G A A C G T C G A T G A T C