Information for 5-GRKKRATTGCTGT (Motif 6)

A C T G C T G A A C G T A C T G C T A G C G T A C G A T A C G T A T C G A G T C A C G T A C T G A C G T
Reverse Opposite:
G T C A A G T C C G T A A C T G A T G C C G T A C G T A A C G T A G T C G T A C G T C A A G C T A G T C
p-value:1e-16
log p-value:-3.723e+01
Information Content per bp:1.870
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.93%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.4 +/- 15.9bp
Average Position of motif in Background44.3 +/- 38.7bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hmx1/MA0896.1/Jaspar

Match Rank:1
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---GRKKRATTGCTGT-
ANNCATTAATTGCTNGN
 A C G T A C G T A C G T A C T G C T G A A C G T A C T G C T A G C G T A C G A T A C G T A T C G A G T C A C G T A C T G A C G T A C G T
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:2
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---GRKKRATTGCTGT-
ANNCATTAATTGCTNGN
 A C G T A C G T A C G T A C T G C T G A A C G T A C T G C T A G C G T A C G A T A C G T A T C G A G T C A C G T A C T G A C G T A C G T
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.63
Offset:8
Orientation:forward strand
Alignment:GRKKRATTGCTGT-
--------GCTGTG
 A C T G C T G A A C G T A C T G C T A G C G T A C G A T A C G T A T C G A G T C A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:4
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GRKKRATTGCTGT
TGATTRATGGCY--
 A C G T A C T G C T G A A C G T A C T G C T A G C G T A C G A T A C G T A T C G A G T C A C G T A C T G A C G T
C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C A C G T A C G T

PBX1/MA0070.1/Jaspar

Match Rank:5
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GRKKRATTGCTGT
-TTTGATTGATGN
 A C T G C T G A A C G T A C T G C T A G C G T A C G A T A C G T A T C G A G T C A C G T A C T G A C G T
A C G T C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G

PB0144.1_Lef1_2/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GRKKRATTGCTGT--
NNANTGATTGATNTTN
 A C G T A C T G C T G A A C G T A C T G C T A G C G T A C G A T A C G T A T C G A G T C A C G T A C T G A C G T A C G T A C G T
G C A T C G T A T C G A C A T G G A C T C T A G G T C A G A C T C G A T T A C G C G T A C G A T A T G C A G C T G C A T A T G C

Hmx2/MA0897.1/Jaspar

Match Rank:7
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GRKKRATTGCTGT-
ATTCNTTAATTGCTTGT
 A C G T A C G T A C G T A C T G C T G A A C G T A C T G C T A G C G T A C G A T A C G T A T C G A G T C A C G T A C T G A C G T A C G T
G C T A G A C T A C G T A G T C C G A T G C A T G C A T C T G A C G T A A C G T A G C T C A T G A G T C A G C T A C G T A T C G A G C T

PH0042.1_Hmx2/Jaspar

Match Rank:8
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GRKKRATTGCTGT-
ATTCNTTAATTGCTTGT
 A C G T A C G T A C G T A C T G C T G A A C G T A C T G C T A G C G T A C G A T A C G T A T C G A G T C A C G T A C T G A C G T A C G T
G C T A G A C T A C G T A G T C C G A T G C A T G C A T C T G A C G T A A C G T A G C T C A T G A G T C A G C T A C G T A T C G A G C T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GRKKRATTGCTGT
-GTTAATGGCC--
 A C T G C T G A A C G T A C T G C T A G C G T A C G A T A C G T A T C G A G T C A C G T A C T G A C G T
A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T A C G T

Hmx3/MA0898.1/Jaspar

Match Rank:10
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GRKKRATTGCTGT-
ATTNNTTAATTGCTTGT
 A C G T A C G T A C G T A C T G C T G A A C G T A C T G C T A G C G T A C G A T A C G T A T C G A G T C A C G T A C T G A C G T A C G T
G C T A G C A T A G C T A G T C C G A T G C A T G C A T C T G A C G T A C A G T G A C T C T A G G A T C A G C T A C G T T A C G A C G T