Information for 9-GCTAACCAGA (Motif 15)

T A C G T G A C G A C T T C G A T G C A T A G C G A T C C T G A T C A G T C G A
Reverse Opposite:
A G C T A G T C A G C T C T A G A T C G A C G T A G C T C T G A A C T G A T G C
p-value:1e-12
log p-value:-2.781e+01
Information Content per bp:1.668
Number of Target Sequences with motif51.0
Percentage of Target Sequences with motif6.15%
Number of Background Sequences with motif890.6
Percentage of Background Sequences with motif1.91%
Average Position of motif in Targets48.2 +/- 25.7bp
Average Position of motif in Background50.0 +/- 30.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:1
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GCTAACCAGA-
-NAAACCACAG
 T A C G T G A C G A C T T C G A T G C A T A G C G A T C C T G A T C A G T C G A A C G T
A C G T T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:2
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:GCTAACCAGA--
--AAACCACAGC
 T A C G T G A C G A C T T C G A T G C A T A G C G A T C C T G A T C A G T C G A A C G T A C G T
A C G T A C G T G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:3
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:GCTAACCAGA--
--ATGCCAGACN
 T A C G T G A C G A C T T C G A T G C A T A G C G A T C C T G A T C A G T C G A A C G T A C G T
A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

PH0040.1_Hmbox1/Jaspar

Match Rank:4
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---GCTAACCAGA----
GANGTTAACTAGTTTNN
 A C G T A C G T A C G T T A C G T G A C G A C T T C G A T G C A T A G C G A T C C T G A T C A G T C G A A C G T A C G T A C G T A C G T
T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:5
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GCTAACCAGA---
-NWAACCACADNN
 T A C G T G A C G A C T T C G A T G C A T A G C G A T C C T G A T C A G T C G A A C G T A C G T A C G T
A C G T T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:6
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GCTAACCAGA--
--AAACCACANN
 T A C G T G A C G A C T T C G A T G C A T A G C G A T C C T G A T C A G T C G A A C G T A C G T
A C G T A C G T G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A

RUNX1/MA0002.2/Jaspar

Match Rank:7
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GCTAACCAGA---
--AAACCACAGAN
 T A C G T G A C G A C T T C G A T G C A T A G C G A T C C T G A T C A G T C G A A C G T A C G T A C G T
A C G T A C G T G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:GCTAACCAGA-----
-----CCAGACRSVB
 T A C G T G A C G A C T T C G A T G C A T A G C G A T C C T G A T C A G T C G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer

Match Rank:9
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GCTAACCAGA-
NDGTAAACARRN
 A C G T T A C G T G A C G A C T T C G A T G C A T A G C G A T C C T G A T C A G T C G A A C G T
G C A T C T A G T C A G A C G T C G T A C G T A C G T A A G T C C G T A T C A G T C A G C T G A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:GCTAACCAGA---
-----CCAGACAG
 T A C G T G A C G A C T T C G A T G C A T A G C G A T C C T G A T C A G T C G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G