Information for 5-GCCTCTAATGCCAAAA (Motif 13)

A C T G T G A C A G T C C G A T A G T C A C G T C G T A G T C A A C G T A C T G G T A C G T A C C G T A C G T A C T G A C G T A
Reverse Opposite:
A C G T A G C T A C G T A C G T A C T G A C T G A G T C C G T A A C G T C G A T C G T A A C T G C G T A A C T G A C T G A G T C
p-value:1e-12
log p-value:-2.912e+01
Information Content per bp:1.881
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets48.4 +/- 22.5bp
Average Position of motif in Background37.8 +/- 19.7bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.62
Offset:6
Orientation:forward strand
Alignment:GCCTCTAATGCCAAAA
------GGTGCCAAGT
 A C T G T G A C A G T C C G A T A G T C A C G T C G T A G T C A A C G T A C T G G T A C G T A C C G T A C G T A C T G A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.58
Offset:6
Orientation:forward strand
Alignment:GCCTCTAATGCCAAAA
------CGTGCCAAG-
 A C T G T G A C A G T C C G A T A G T C A C G T C G T A G T C A A C G T A C T G G T A C G T A C C G T A C G T A C T G A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.57
Offset:8
Orientation:reverse strand
Alignment:GCCTCTAATGCCAAAA
--------TGCCAA--
 A C T G T G A C A G T C C G A T A G T C A C G T C G T A G T C A A C G T A C T G G T A C G T A C C G T A C G T A C T G A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T

HOXA5/MA0158.1/Jaspar

Match Rank:4
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GCCTCTAATGCCAAAA
--CACTAATT------
 A C T G T G A C A G T C C G A T A G T C A C G T C G T A G T C A A C G T A C T G G T A C G T A C C G T A C G T A C T G A C G T A
A C G T A C G T G T A C C T G A A T G C C G A T C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.55
Offset:7
Orientation:forward strand
Alignment:GCCTCTAATGCCAAAA
-------TTGCCAAG-
 A C T G T G A C A G T C C G A T A G T C A C G T C G T A G T C A A C G T A C T G G T A C G T A C C G T A C G T A C T G A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T

Hic1/MA0739.1/Jaspar

Match Rank:6
Score:0.53
Offset:7
Orientation:forward strand
Alignment:GCCTCTAATGCCAAAA
-------ATGCCAACC
 A C T G T G A C A G T C C G A T A G T C A C G T C G T A G T C A A C G T A C T G G T A C G T A C C G T A C G T A C T G A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:GCCTCTAATGCCAAAA
-----TTATGCAAAT-
 A C T G T G A C A G T C C G A T A G T C A C G T C G T A G T C A A C G T A C T G G T A C G T A C C G T A C G T A C T G A C G T A
A C G T A C G T A C G T A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T

PB0145.1_Mafb_2/Jaspar

Match Rank:8
Score:0.52
Offset:4
Orientation:forward strand
Alignment:GCCTCTAATGCCAAAA---
----CAATTGCAAAAATAT
 A C T G T G A C A G T C C G A T A G T C A C G T C G T A G T C A A C G T A C T G G T A C G T A C C G T A C G T A C T G A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.50
Offset:8
Orientation:reverse strand
Alignment:GCCTCTAATGCCAAAA--------
--------TGCCAAAATAAACANN
 A C T G T G A C A G T C C G A T A G T C A C G T C G T A G T C A A C G T A C T G G T A C G T A C C G T A C G T A C T G A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

POU2F2/MA0507.1/Jaspar

Match Rank:10
Score:0.49
Offset:5
Orientation:reverse strand
Alignment:GCCTCTAATGCCAAAA--
-----ATATGCAAATNNN
 A C T G T G A C A G T C C G A T A G T C A C G T C G T A G T C A A C G T A C T G G T A C G T A C C G T A C G T A C T G A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A