Information for 14-CTGCCATGGC (Motif 21)

A G T C A C G T A C T G A G T C A G T C C G T A A C G T A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C C G T A A C G T A C T G A C T G A G T C C G T A A C T G
p-value:1e-5
log p-value:-1.212e+01
Information Content per bp:1.530
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif13.5
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets48.4 +/- 16.4bp
Average Position of motif in Background56.4 +/- 32.2bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--CTGCCATGGC--
NGTTGCCATGGCAA
 A C G T A C G T A G T C A C G T A C T G A G T C A G T C C G T A A C G T A C T G A C T G A G T C A C G T A C G T
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--CTGCCATGGC--
GGTTGCCATGGCAA
 A C G T A C G T A G T C A C G T A C T G A G T C A G T C C G T A A C G T A C T G A C T G A G T C A C G T A C G T
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:3
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CTGCCATGGC----
GTTGCCATGGCAACM
 A C G T A G T C A C G T A C T G A G T C A G T C C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T
C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:4
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---CTGCCATGGC---
CGGTTGCCATGGCAAC
 A C G T A C G T A C G T A G T C A C G T A C T G A G T C A G T C C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T
A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C

Rfx1/MA0509.1/Jaspar

Match Rank:5
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CTGCCATGGC---
GTTGCCATGGNAAC
 A C G T A G T C A C G T A C T G A G T C A G T C C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T
A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CTGCCATGGC
TTGCCAAG--
 A G T C A C G T A C T G A G T C A G T C C G T A A C G T A C T G A C T G A G T C
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T

RFX5/MA0510.2/Jaspar

Match Rank:7
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CTGCCATGGC----
CGTTGCCATGGCAACG
 A C G T A C G T A G T C A C G T A C T G A G T C A G T C C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T
A T G C C T A G A G C T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T G C A G A T C T A C G

RFX2/MA0600.2/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CTGCCATGGC----
CGTTGCCATGGCAACG
 A C G T A C G T A G T C A C G T A C T G A G T C A G T C C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T
A T G C T C A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

RFX3/MA0798.1/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CTGCCATGGC----
CGTTGCCATGGCAACN
 A C G T A C G T A G T C A C G T A C T G A G T C A G T C C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

NFIX/MA0671.1/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CTGCCATGGC
CGTGCCAAG--
 A C G T A G T C A C G T A C T G A G T C A G T C C G T A A C G T A C T G A C T G A G T C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T