Information for 5-AGCCCCCTAGCTGTGA (Motif 5)

C G T A A C T G A G T C A G T C A G T C A G T C A G T C A C G T C G T A A T C G A G T C A C G T C T A G A C G T A T C G G C T A
Reverse Opposite:
C G A T A T G C C G T A A G T C C G T A A C T G A T G C G A C T C G T A A C T G A C T G A C T G A C T G C T A G A G T C C G A T
p-value:1e-13
log p-value:-3.066e+01
Information Content per bp:1.909
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets58.2 +/- 21.8bp
Average Position of motif in Background53.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZIC1/MA0696.1/Jaspar

Match Rank:1
Score:0.66
Offset:1
Orientation:forward strand
Alignment:AGCCCCCTAGCTGTGA
-GACCCCCCGCTGTG-
 C G T A A C T G A G T C A G T C A G T C A G T C A G T C A C G T C G T A A T C G A G T C A C G T C T A G A C G T A T C G G C T A
A C G T A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:2
Score:0.63
Offset:1
Orientation:forward strand
Alignment:AGCCCCCTAGCTGTGA
-GACCCCCCGCTGCGC
 C G T A A C T G A G T C A G T C A G T C A G T C A G T C A C G T C G T A A T C G A G T C A C G T C T A G A C G T A T C G G C T A
A C G T A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AGCCCCCTAGCTGTGA
-GGCCYCCTGCTGDGH
 C G T A A C T G A G T C A G T C A G T C A G T C A G T C A C G T C G T A A T C G A G T C A C G T C T A G A C G T A T C G G C T A
A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

ZIC4/MA0751.1/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AGCCCCCTAGCTGTGA
-GACCCCCCGCTGTGC
 C G T A A C T G A G T C A G T C A G T C A G T C A G T C A C G T C G T A A T C G A G T C A C G T C T A G A C G T A T C G G C T A
A C G T A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:AGCCCCCTAGCTGTGA
---CCCCCTGCTGTG-
 C G T A A C T G A G T C A G T C A G T C A G T C A G T C A C G T C G T A A T C G A G T C A C G T C T A G A C G T A T C G G C T A
A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T

INSM1/MA0155.1/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AGCCCCCTAGCTGTGA
CGCCCCCTGACA----
 C G T A A C T G A G T C A G T C A G T C A G T C A G T C A C G T C G T A A T C G A G T C A C G T C T A G A C G T A T C G G C T A
G A T C C T A G T G A C A G T C A G T C A T G C A G T C C G A T C A T G T C G A G T A C G T C A A C G T A C G T A C G T A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------AGCCCCCTAGCTGTGA
CNNBRGCGCCCCCTGSTGGC--
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A G T C A G T C A G T C A G T C A G T C A C G T C G T A A T C G A G T C A C G T C T A G A C G T A T C G G C T A
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C A C G T A C G T

LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer

Match Rank:8
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-AGCCCCCTAGCTGTGA
AAGACCCYYN-------
 A C G T C G T A A C T G A G T C A G T C A G T C A G T C A G T C A C G T C G T A A T C G A G T C A C G T C T A G A C G T A T C G G C T A
T C G A T G C A A C T G G T C A A G T C A G T C A G T C A G T C A G C T T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CTCF/MA0139.1/Jaspar

Match Rank:9
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---AGCCCCCTAGCTGTGA
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T C G T A A C T G A G T C A G T C A G T C A G T C A G T C A C G T C G T A A T C G A G T C A C G T C T A G A C G T A T C G G C T A
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

PH0169.1_Tgif1/Jaspar

Match Rank:10
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:AGCCCCCTAGCTGTGA-----
----NNNCAGCTGTCAATATN
 C G T A A C T G A G T C A G T C A G T C A G T C A G T C A C G T C G T A A T C G A G T C A C G T C T A G A C G T A T C G G C T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C