Information for 5-TCTGTTGCCA (Motif 5)

C G A T A T G C G A C T A C T G A C G T A C G T A T C G A T G C A G T C C G T A
Reverse Opposite:
C G A T C T A G A T C G T A G C G T C A T G C A A G T C C T G A A T C G C G T A
p-value:1e-11
log p-value:-2.669e+01
Information Content per bp:1.839
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif2.66%
Number of Background Sequences with motif189.9
Percentage of Background Sequences with motif0.40%
Average Position of motif in Targets47.2 +/- 22.3bp
Average Position of motif in Background49.7 +/- 33.4bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:TCTGTTGCCA---
-CTGTTGCTAGGS
 C G A T A T G C G A C T A C T G A C G T A C G T A T C G A T G C A G T C C G T A A C G T A C G T A C G T
A C G T A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.70
Offset:4
Orientation:forward strand
Alignment:TCTGTTGCCA--
----TTGCCAAG
 C G A T A T G C G A C T A C T G A C G T A C G T A T C G A T G C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.68
Offset:3
Orientation:forward strand
Alignment:TCTGTTGCCA--
---CGTGCCAAG
 C G A T A T G C G A C T A C T G A C G T A C G T A T C G A T G C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.67
Offset:3
Orientation:forward strand
Alignment:TCTGTTGCCA---
---GGTGCCAAGT
 C G A T A T G C G A C T A C T G A C G T A C G T A T C G A T G C A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

PB0055.1_Rfx4_1/Jaspar

Match Rank:5
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TCTGTTGCCA-----
NNCGTTGCTATGGNN
 C G A T A T G C G A C T A C T G A C G T A C G T A T C G A T G C A G T C C G T A A C G T A C G T A C G T A C G T A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.66
Offset:5
Orientation:reverse strand
Alignment:TCTGTTGCCA-
-----TGCCAA
 C G A T A T G C G A C T A C T G A C G T A C G T A T C G A T G C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:7
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TCTGTTGCCA-----
NCCGTTGCTANGNGN
 C G A T A T G C G A C T A C T G A C G T A C G T A T C G A T G C A G T C C G T A A C G T A C G T A C G T A C G T A C G T
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TCTGTTGCCA
NATGTTGCAA
 C G A T A T G C G A C T A C T G A C G T A C G T A T C G A T G C A G T C C G T A
C T A G T C G A C G A T C T A G G C A T C A G T C T A G G A T C C G T A G T C A

Rfx1/MA0509.1/Jaspar

Match Rank:9
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:TCTGTTGCCA-------
---GTTGCCATGGNAAC
 C G A T A T G C G A C T A C T G A C G T A C G T A T C G A T G C A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

PB0054.1_Rfx3_1/Jaspar

Match Rank:10
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----TCTGTTGCCA---------
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T C G A T A T G C G A C T A C T G A C G T A C G T A T C G A T G C A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A