Information for 5-GGTGAAGGCC (Motif 5)

C T A G C T A G C A G T C T A G G C T A G T C A C T A G A C T G T G A C A G T C
Reverse Opposite:
T C A G A C T G T G A C G A T C C A G T C G A T G A T C G T C A G A T C G A T C
p-value:1e-20
log p-value:-4.666e+01
Information Content per bp:1.659
Number of Target Sequences with motif61.0
Percentage of Target Sequences with motif12.30%
Number of Background Sequences with motif1272.0
Percentage of Background Sequences with motif2.89%
Average Position of motif in Targets52.3 +/- 26.4bp
Average Position of motif in Background50.1 +/- 32.9bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:1
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-GGTGAAGGCC-
AGGTCAAGGTCA
 A C G T C T A G C T A G C A G T C T A G G C T A G T C A C T A G A C T G T G A C A G T C A C G T
C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:2
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-GGTGAAGGCC-
AGGTCAAGGTCA
 A C G T C T A G C T A G C A G T C T A G G C T A G T C A C T A G A C T G T G A C A G T C A C G T
T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.69
Offset:5
Orientation:forward strand
Alignment:GGTGAAGGCC---
-----AGGCCTNG
 C T A G C T A G C A G T C T A G G C T A G T C A C T A G A C T G T G A C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G

Nr5a2/MA0505.1/Jaspar

Match Rank:4
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GGTGAAGGCC---
AAGTTCAAGGTCAGC
 A C G T A C G T C T A G C T A G C A G T C T A G G C T A G T C A C T A G A C T G T G A C A G T C A C G T A C G T A C G T
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:5
Score:0.66
Offset:5
Orientation:forward strand
Alignment:GGTGAAGGCC---
-----AGGCCTAG
 C T A G C T A G C A G T C T A G G C T A G T C A C T A G A C T G T G A C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:6
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GGTGAAGGCC-
-NTCAAGGTCA
 C T A G C T A G C A G T C T A G G C T A G T C A C T A G A C T G T G A C A G T C A C G T
A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A

ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GGTGAAGGCC-
TGGGGAAGGGCM
 A C G T C T A G C T A G C A G T C T A G G C T A G T C A C T A G A C T G T G A C A G T C A C G T
G A C T C T A G C T A G C T A G A C T G T C G A C T G A C T A G C T A G C T A G G T A C G T C A

Zfx/MA0146.2/Jaspar

Match Rank:8
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:GGTGAAGGCC--------
----CAGGCCNNGGCCNN
 C T A G C T A G C A G T C T A G G C T A G T C A C T A G A C T G T G A C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:9
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GGTGAAGGCC-
-BTCAAGGTCA
 C T A G C T A G C A G T C T A G G C T A G T C A C T A G A C T G T G A C A G T C A C G T
A C G T A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:10
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GGTGAAGGCC---
---CAAGGHCANV
 C T A G C T A G C A G T C T A G G C T A G T C A C T A G A C T G T G A C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G