Information for 20-CSACATMGCCACT (Motif 29)

A G T C T A C G C G T A A G T C C G T A G A C T G T C A C A T G G T A C A G T C C G T A A G T C A C G T
Reverse Opposite:
C G T A A C T G C G A T A C T G A C T G G A T C A C G T C T G A A C G T A C T G A C G T A T G C C T A G
p-value:1e-8
log p-value:-1.924e+01
Information Content per bp:1.806
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.21%
Number of Background Sequences with motif11.4
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets38.2 +/- 25.5bp
Average Position of motif in Background28.7 +/- 24.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:1
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:CSACATMGCCACT---
------MRSCACTYAA
 A G T C T A C G C G T A A G T C C G T A G A C T G T C A C A T G G T A C A G T C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:2
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CSACATMGCCACT
NWAACCACADNN-----
 A C G T A C G T A C G T A C G T A G T C T A C G C G T A A G T C C G T A G A C T G T C A C A T G G T A C A G T C C G T A A G T C A C G T
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.58
Offset:6
Orientation:forward strand
Alignment:CSACATMGCCACT---
------AASCACTCAA
 A G T C T A C G C G T A A G T C C G T A G A C T G T C A C A T G G T A C A G T C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

PH0004.1_Nkx3-2/Jaspar

Match Rank:4
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CSACATMGCCACT-------
---CATAACCACTTAACAAC
 A G T C T A C G C G T A A G T C C G T A G A C T G T C A C A T G G T A C A G T C C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:5
Score:0.56
Offset:7
Orientation:reverse strand
Alignment:CSACATMGCCACT----
-------NSCACTYVAV
 A G T C T A C G C G T A A G T C C G T A G A C T G T C A C A T G G T A C A G T C C G T A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G

NKX2-3/MA0672.1/Jaspar

Match Rank:6
Score:0.56
Offset:7
Orientation:forward strand
Alignment:CSACATMGCCACT----
-------ACCACTTGAA
 A G T C T A C G C G T A A G T C C G T A G A C T G T C A C A T G G T A C A G T C C G T A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:7
Score:0.56
Offset:7
Orientation:forward strand
Alignment:CSACATMGCCACT----
-------RSCACTYRAG
 A G T C T A C G C G T A A G T C C G T A G A C T G T C A C A T G G T A C A G T C C G T A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:8
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CSACATMGCCACT-------
---CTTAACCACTTAAGGAT
 A G T C T A C G C G T A A G T C C G T A G A C T G T C A C A T G G T A C A G T C C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T

KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CSACATMGCCACT
GGACACACCCCC-
 A G T C T A C G C G T A A G T C C G T A G A C T G T C A C A T G G T A C A G T C C G T A A G T C A C G T
T C A G T A C G G T C A A G T C G T C A A G T C C T G A A G T C G T A C G A T C G T A C A G T C A C G T

ZNF354C/MA0130.1/Jaspar

Match Rank:10
Score:0.55
Offset:6
Orientation:forward strand
Alignment:CSACATMGCCACT
------ATCCAC-
 A G T C T A C G C G T A A G T C C G T A G A C T G T C A C A T G G T A C A G T C C G T A A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G C A G C A T A G T C A G T C C G T A A T G C A C G T