Information for 9-CTCGCCATTACAA (Motif 12)

A G T C A C G T A T G C A C T G A G T C A G T C C T G A A G C T A C G T C G T A A G T C G T C A C G T A
Reverse Opposite:
C G A T A C G T A C T G A C G T C G T A C T G A A G C T A C T G A C T G A G T C A T C G C G T A C T A G
p-value:1e-11
log p-value:-2.724e+01
Information Content per bp:1.912
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.01%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets46.8 +/- 22.1bp
Average Position of motif in Background74.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY2/MA0748.1/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CTCGCCATTACAA
GTCCGCCATTA---
 A C G T A G T C A C G T A T G C A C T G A G T C A G T C C T G A A G C T A C G T C G T A A G T C G T C A C G T A
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T A C G T A C G T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:2
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:CTCGCCATTACAA
----YCATTAMC-
 A G T C A C G T A T G C A C T G A G T C A G T C C T G A A G C T A C G T C G T A A G T C G T C A C G T A
A C G T A C G T A C G T A C G T A G C T T G A C C G T A A C G T A C G T C G T A G T C A T G A C A C G T

BARX1/MA0875.1/Jaspar

Match Rank:3
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CTCGCCATTACAA
---GCAATTAG--
 A G T C A C G T A T G C A C T G A G T C A G T C C T G A A G C T A C G T C G T A A G T C G T C A C G T A
A C G T A C G T A C G T T C A G G A T C T G C A T G C A A C G T A C G T C G T A T C A G A C G T A C G T

BSX/MA0876.1/Jaspar

Match Rank:4
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CTCGCCATTACAA
---CCAATTAA--
 A G T C A C G T A T G C A C T G A G T C A G T C C T G A A G C T A C G T C G T A A G T C G T C A C G T A
A C G T A C G T A C G T T A G C G A T C T G C A T C G A A C G T C G A T C G T A T C G A A C G T A C G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:5
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CTCGCCATTACAA
---BCMATTAG--
 A G T C A C G T A T G C A C T G A G T C A G T C C T G A A G C T A C G T C G T A A G T C G T C A C G T A
A C G T A C G T A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CTCGCCATTACAA
--GGCCATTAAC-
 A G T C A C G T A T G C A C T G A G T C A G T C C T G A A G C T A C G T C G T A A G T C G T C A C G T A
A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CTCGCCATTACAA--
-TTGCCATGGCAACN
 A G T C A C G T A T G C A C T G A G T C A G T C C T G A A G C T A C G T C G T A A G T C G T C A C G T A A C G T A C G T
A C G T A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CTCGCCATTACAA--
-TTGCCATGGCAACC
 A G T C A C G T A T G C A C T G A G T C A G T C C T G A A G C T A C G T C G T A A G T C G T C A C G T A A C G T A C G T
A C G T A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

PH0063.1_Hoxb8/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CTCGCCATTACAA--
ACCGGCAATTAATAAA
 A C G T A G T C A C G T A T G C A C T G A G T C A G T C C T G A A G C T A C G T C G T A A G T C G T C A C G T A A C G T A C G T
G C T A T A G C A G T C C A T G C T A G G A T C G T C A C G T A C G A T G C A T C G T A G C T A G A C T G T C A C T G A C G T A

Barhl1/MA0877.1/Jaspar

Match Rank:10
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CTCGCCATTACAA
--NNCAATTANN-
 A G T C A C G T A T G C A C T G A G T C A G T C C T G A A G C T A C G T C G T A A G T C G T C A C G T A
A C G T A C G T T C G A T A C G G A T C T C G A G C T A G A C T G C A T C G T A C T A G T A G C A C G T