Information for 5-TGWTAATKGC (Motif 9)

A G C T A T C G C G T A A C G T C G T A C T G A A G C T C A G T A C T G T A G C
Reverse Opposite:
A T C G A G T C G T C A T C G A G A C T C G A T C G T A G C A T A T G C T C G A
p-value:1e-11
log p-value:-2.742e+01
Information Content per bp:1.664
Number of Target Sequences with motif59.0
Percentage of Target Sequences with motif6.95%
Number of Background Sequences with motif1121.4
Percentage of Background Sequences with motif2.41%
Average Position of motif in Targets45.6 +/- 26.7bp
Average Position of motif in Background49.7 +/- 31.5bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BARX1/MA0875.1/Jaspar

Match Rank:1
Score:0.78
Offset:2
Orientation:reverse strand
Alignment:TGWTAATKGC
--NTAATTGN
 A G C T A T C G C G T A A C G T C G T A C T G A A G C T C A G T A C T G T A G C
A C G T A C G T A G T C A C G T C G T A C G T A A C G T A C G T C T A G A G T C

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:TGWTAATKGC-
-GTTAATGGCC
 A G C T A T C G C G T A A C G T C G T A C T G A A G C T C A G T A C T G T A G C A C G T
A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C

MSX2/MA0708.1/Jaspar

Match Rank:3
Score:0.77
Offset:2
Orientation:reverse strand
Alignment:TGWTAATKGC
--NTAATTGG
 A G C T A T C G C G T A A C G T C G T A C T G A A G C T C A G T A C T G T A G C
A C G T A C G T A G C T C A G T T C G A C G T A A C G T C A G T C T A G A T C G

Barhl1/MA0877.1/Jaspar

Match Rank:4
Score:0.76
Offset:1
Orientation:forward strand
Alignment:TGWTAATKGC-
-GCTAATTGCT
 A G C T A T C G C G T A A C G T C G T A C T G A A G C T C A G T A C T G T A G C A C G T
A C G T A T C G G A T C G C A T C G T A C T G A C G A T A G C T C T A G A T G C A G C T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:5
Score:0.76
Offset:1
Orientation:forward strand
Alignment:TGWTAATKGC
-GKTAATGR-
 A G C T A T C G C G T A A C G T C G T A C T G A A G C T C A G T A C T G T A G C
A C G T A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A A C G T

BSX/MA0876.1/Jaspar

Match Rank:6
Score:0.76
Offset:2
Orientation:reverse strand
Alignment:TGWTAATKGC
--NTAATTGG
 A G C T A T C G C G T A A C G T C G T A C T G A A G C T C A G T A C T G T A G C
A C G T A C G T A G C T A C G T C G T A C G T A A G C T A C G T C T A G A T C G

Msx3/MA0709.1/Jaspar

Match Rank:7
Score:0.76
Offset:2
Orientation:reverse strand
Alignment:TGWTAATKGC
--NTAATTGN
 A G C T A T C G C G T A A C G T C G T A C T G A A G C T C A G T A C T G T A G C
A C G T A C G T A G C T G C A T C T G A C G T A A C G T A G C T C T A G A T C G

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:8
Score:0.75
Offset:2
Orientation:forward strand
Alignment:TGWTAATKGC
--CTAATKGV
 A G C T A T C G C G T A A C G T C G T A C T G A A G C T C A G T A C T G T A G C
A C G T A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C

EN2/MA0642.1/Jaspar

Match Rank:9
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:TGWTAATKGC-
-GNTAATTGGN
 A G C T A T C G C G T A A C G T C G T A C T G A A G C T C A G T A C T G T A G C A C G T
A C G T T A C G A T G C A G C T T C G A C G T A A C G T A C G T T C A G T A C G A T C G

Nobox/MA0125.1/Jaspar

Match Rank:10
Score:0.75
Offset:3
Orientation:forward strand
Alignment:TGWTAATKGC-
---TAATTGGT
 A G C T A T C G C G T A A C G T C G T A C T G A A G C T C A G T A C T G T A G C A C G T
A C G T A C G T A C G T A G C T C G T A C G T A A C G T C A G T C T A G A T C G A G C T