Information for 1-GCCATCTGST (Motif 1)

C A T G A T G C G A T C T C G A G C A T A T G C A C G T C T A G A T C G G C A T
Reverse Opposite:
C G T A T A G C G A T C C G T A A T C G C G T A A G C T C T A G T A C G G T A C
p-value:1e-25
log p-value:-5.962e+01
Information Content per bp:1.621
Number of Target Sequences with motif173.0
Percentage of Target Sequences with motif20.38%
Number of Background Sequences with motif3978.2
Percentage of Background Sequences with motif8.55%
Average Position of motif in Targets52.7 +/- 27.3bp
Average Position of motif in Background50.1 +/- 34.1bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:1
Score:0.93
Offset:0
Orientation:forward strand
Alignment:GCCATCTGST
GCCATCTGTT
 C A T G A T G C G A T C T C G A G C A T A T G C A C G T C T A G A T C G G C A T
T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:2
Score:0.89
Offset:0
Orientation:forward strand
Alignment:GCCATCTGST
ACCATCTGTT
 C A T G A T G C G A T C T C G A G C A T A T G C A C G T C T A G A T C G G C A T
T C G A T G A C G T A C C G T A C A G T T G A C A C G T A C T G A G C T A G C T

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:3
Score:0.86
Offset:-4
Orientation:reverse strand
Alignment:----GCCATCTGST---
CCNNACCATCTGGCCTN
 A C G T A C G T A C G T A C G T C A T G A T G C G A T C T C G A G C A T A T G C A C G T C T A G A T C G G C A T A C G T A C G T A C G T
A G T C T A G C T A C G C T A G T C G A G T A C A G T C C G T A A G C T T G A C A G C T C A T G A T C G G T A C G A T C A G C T C A G T

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:4
Score:0.85
Offset:0
Orientation:forward strand
Alignment:GCCATCTGST
RCCATMTGTT
 C A T G A T G C G A T C T C G A G C A T A T G C A C G T C T A G A T C G G C A T
C T G A T G A C T G A C C G T A A C G T T G A C A G C T C T A G A C G T G A C T

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:5
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:GCCATCTGST--
GCCAGCTGBTNB
 C A T G A T G C G A T C T C G A G C A T A T G C A C G T C T A G A T C G G C A T A C G T A C G T
T C A G T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G C T T G C A A G T C

TAL1::TCF3/MA0091.1/Jaspar

Match Rank:6
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--GCCATCTGST
CGACCATCTGTT
 A C G T A C G T C A T G A T G C G A T C T C G A G C A T A T G C A C G T C T A G A T C G G C A T
G T A C T A C G C T G A G T A C A T G C C G T A A C G T G T A C A C G T A C T G A C G T G A C T

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:7
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:GCCATCTGST--
NVCAGCTGBBNN
 C A T G A T G C G A T C T C G A G C A T A T G C A C G T C T A G A T C G G C A T A C G T A C G T
T C G A T A C G G T A C C G T A A T C G T G A C C G A T A C T G A T G C A T G C T C A G G A T C

PB0047.1_Myf6_1/Jaspar

Match Rank:8
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--GCCATCTGST----
CNGACACCTGTTCNNN
 A C G T A C G T C A T G A T G C G A T C T C G A G C A T A T G C A C G T C T A G A T C G G C A T A C G T A C G T A C G T A C G T
T G A C C T A G T C A G T G C A A G T C C T G A T G A C A T G C C G A T C T A G A G C T A G C T T A G C G A C T A G C T A G T C

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.75
Offset:2
Orientation:reverse strand
Alignment:GCCATCTGST
--CAGCTGNT
 C A T G A T G C G A T C T C G A G C A T A T G C A C G T C T A G A T C G G C A T
A C G T A C G T G T A C C G T A A C T G T G A C C G A T A C T G A G T C G A C T

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:10
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:GCCATCTGST-
-CCAGCTGTTN
 C A T G A T G C G A T C T C G A G C A T A T G C A C G T C T A G A T C G G C A T A C G T
A C G T T G A C G T A C C T G A A C T G T G A C G C A T C A T G A C G T A C G T G C T A