Information for 4-CYWGGCARKKKCTGYW (Motif 8)

A G T C A G T C C G T A A C T G A C T G A G T C C G T A C T A G A C G T A C T G A C T G A G T C A C G T A C T G A G C T G C T A
Reverse Opposite:
C G A T C T G A A G T C C G T A C T A G G T A C G T A C G T C A A G T C A C G T A C T G A G T C A G T C C G A T C T A G C T A G
p-value:1e-14
log p-value:-3.347e+01
Information Content per bp:1.806
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.90%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets54.8 +/- 24.2bp
Average Position of motif in Background62.4 +/- 16.5bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CYWGGCARKKKCTGYW
CTTGGCAA--------
 A G T C A G T C C G T A A C T G A C T G A G T C C G T A C T A G A C G T A C T G A C T G A G T C A C G T A C T G A G C T G C T A
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CYWGGCARKKKCTGYW
-AAGGCAAGTGT----
 A G T C A G T C C G T A A C T G A C T G A G T C C G T A C T A G A C G T A C T G A C T G A G T C A C G T A C T G A G C T G C T A
A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CYWGGCARKKKCTGYW
NNTTGGCANN-------
 A C G T A G T C A G T C C G T A A C T G A C T G A G T C C G T A C T A G A C G T A C T G A C T G A G T C A C G T A C T G A G C T G C T A
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CYWGGCARKKKCTGYW
NTTGGCANN-------
 A G T C A G T C C G T A A C T G A C T G A G T C C G T A C T A G A C G T A C T G A C T G A G T C A C G T A C T G A G C T G C T A
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CYWGGCARKKKCTGYW
-TTGGCA---------
 A G T C A G T C C G T A A C T G A C T G A G T C C G T A C T A G A C G T A C T G A C T G A G T C A C G T A C T G A G C T G C T A
A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0149.1_Myb_2/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CYWGGCARKKKCTGYW
NNNTGGCAGTTGGTNN-
 A C G T A G T C A G T C C G T A A C T G A C T G A G T C C G T A C T A G A C G T A C T G A C T G A G T C A C G T A C T G A G C T G C T A
C T A G T A G C T C G A G A C T C T A G C T A G A G T C C T G A A C T G A C G T G A C T C T A G T C A G C A G T G T A C T A C G A C G T

Myb/MA0100.2/Jaspar

Match Rank:7
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CYWGGCARKKKCTGYW
--TGGCAGTTGN----
 A G T C A G T C C G T A A C T G A C T G A G T C C G T A C T A G A C G T A C T G A C T G A G T C A C G T A C T G A G C T G C T A
A C G T A C G T C G A T A C T G C T A G A G T C C G T A A C T G A G C T A C G T C T A G T C A G A C G T A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:8
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CYWGGCARKKKCTGYW
TNNGGGCAG--------
 A C G T A G T C A G T C C G T A A C T G A C T G A G T C C G T A C T A G A C G T A C T G A C T G A G T C A C G T A C T G A G C T G C T A
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---CYWGGCARKKKCTGYW
WDNCTGGGCA---------
 A C G T A C G T A C G T A G T C A G T C C G T A A C T G A C T G A G T C C G T A C T A G A C G T A C T G A C T G A G T C A C G T A C T G A G C T G C T A
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:10
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:CYWGGCARKKKCTGYW
--SDGCAGGTGCNS--
 A G T C A G T C C G T A A C T G A C T G A G T C C G T A C T A G A C G T A C T G A C T G A G T C A C G T A C T G A G C T G C T A
A C G T A C G T A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C A C G T A C G T