Information for 1-AATTAAATTA (Motif 3)

C G T A C G T A A G C T A C G T C G T A C T G A T G C A G A C T A G C T T C G A
Reverse Opposite:
A G C T T C G A C T G A A C G T G A C T G C A T T G C A T C G A A C G T G C A T
p-value:1e-16
log p-value:-3.897e+01
Information Content per bp:1.631
Number of Target Sequences with motif80.0
Percentage of Target Sequences with motif8.96%
Number of Background Sequences with motif1379.2
Percentage of Background Sequences with motif2.98%
Average Position of motif in Targets52.8 +/- 25.7bp
Average Position of motif in Background49.8 +/- 31.3bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.23
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PROP1/MA0715.1/Jaspar

Match Rank:1
Score:0.92
Offset:-1
Orientation:reverse strand
Alignment:-AATTAAATTA
TAATTAAATTA
 A C G T C G T A C G T A A G C T A C G T C G T A C T G A T G C A G A C T A G C T T C G A
G C A T C T G A C G T A G A C T C A G T G C T A C T G A C G T A A G C T C G A T C G T A

PHOX2A/MA0713.1/Jaspar

Match Rank:2
Score:0.91
Offset:-1
Orientation:reverse strand
Alignment:-AATTAAATTA
TAATTAAATTA
 A C G T C G T A C G T A A G C T A C G T C G T A C T G A T G C A G A C T A G C T T C G A
G C A T C G T A T C G A A G C T A G C T C T G A T C G A C T G A G A C T G A C T C G T A

Phox2b/MA0681.1/Jaspar

Match Rank:3
Score:0.91
Offset:-1
Orientation:reverse strand
Alignment:-AATTAAATTA
TAATTAAATTA
 A C G T C G T A C G T A A G C T A C G T C G T A C T G A T G C A G A C T A G C T T C G A
G C A T C G T A C T G A A G C T A G C T C T G A T C G A C T G A A G C T G A C T C G T A

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:4
Score:0.90
Offset:-1
Orientation:reverse strand
Alignment:-AATTAAATTA-
TAATYNRATTAR
 A C G T C G T A C G T A A G C T A C G T C G T A C T G A T G C A G A C T A G C T T C G A A C G T
G C A T C G T A C G T A G A C T A G C T G C A T T C G A T C G A A C G T G A C T C G T A C T A G

Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer

Match Rank:5
Score:0.90
Offset:-2
Orientation:forward strand
Alignment:--AATTAAATTA
NTAATBNAATTA
 A C G T A C G T C G T A C G T A A G C T A C G T C G T A C T G A T G C A G A C T A G C T T C G A
G T A C G C A T C T G A C G T A G A C T A G C T C A T G T G C A C T G A A C G T G A C T C G T A

Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:6
Score:0.83
Offset:-2
Orientation:reverse strand
Alignment:--AATTAAATTA
GTAATCDGATTA
 A C G T A C G T C G T A C G T A A G C T A C G T C G T A C T G A T G C A G A C T A G C T T C G A
C A T G C G A T T C G A C T G A G C A T A G T C C A T G T C A G C T G A A C G T G A C T C G T A

DUX4/MA0468.1/Jaspar

Match Rank:7
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-AATTAAATTA
TGATTAAATTA
 A C G T C G T A C G T A A G C T A C G T C G T A C T G A T G C A G A C T A G C T T C G A
C G A T C T A G C G T A A C G T C A G T T C G A T C G A C T G A A C G T A G C T C G T A

DUXA/MA0884.1/Jaspar

Match Rank:8
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--AATTAAATTA-
NTGATTAAATTAN
 A C G T A C G T C G T A C G T A A G C T A C G T C G T A C T G A T G C A G A C T A G C T T C G A A C G T
G A C T G C A T T C A G T G C A A G C T A C G T T C G A T C G A C T G A A G C T G A C T C T G A C T A G

DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer

Match Rank:9
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---AATTAAATTA--
NWTGATTRGRTTAWN
 A C G T A C G T A C G T C G T A C G T A A G C T A C G T C G T A C T G A T G C A G A C T A G C T T C G A A C G T A C G T
C G T A G C A T C G A T C T A G C G T A A C G T A C G T C T G A T C A G C T A G A C G T A C G T G C T A C G T A G T A C

Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer

Match Rank:10
Score:0.69
Offset:1
Orientation:forward strand
Alignment:AATTAAATTA-
-ADBTAATTAR
 C G T A C G T A A G C T A C G T C G T A C T G A T G C A G A C T A G C T T C G A A C G T
A C G T C G T A C G T A A G C T G A C T T G C A G T C A A C G T A G C T C T G A T C A G