Information for 4-AAAGTTATCAAKGAAA (Motif 5)

C T G A C G T A C G T A A C T G A C G T C A G T T C G A A G C T A G T C G C T A G C T A C A T G C A T G T C G A C G T A C G T A
Reverse Opposite:
A C G T C G A T A C G T G T A C G T A C C G A T C G A T C T A G C T G A A G C T G T C A C G T A G T A C C G A T C G A T A G C T
p-value:1e-14
log p-value:-3.251e+01
Information Content per bp:1.678
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.90%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.4 +/- 19.4bp
Average Position of motif in Background63.4 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.64
Offset:2
Orientation:forward strand
Alignment:AAAGTTATCAAKGAAA
--GGTTGCCATGGCAA
 C T G A C G T A C G T A A C T G A C G T C A G T T C G A A G C T A G T C G C T A G C T A C A T G C A T G T C G A C G T A C G T A
A C G T A C G T C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

RFX4/MA0799.1/Jaspar

Match Rank:2
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:AAAGTTATCAAKGAAA--
--CGTTGCCATGGCAACN
 C T G A C G T A C G T A A C T G A C G T C A G T T C G A A G C T A G T C G C T A G C T A C A T G C A T G T C G A C G T A C G T A A C G T A C G T
A C G T A C G T A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C G T A G A T C T A C G

RFX3/MA0798.1/Jaspar

Match Rank:3
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:AAAGTTATCAAKGAAA--
--CGTTGCCATGGCAACN
 C T G A C G T A C G T A A C T G A C G T C A G T T C G A A G C T A G T C G C T A G C T A C A T G C A T G T C G A C G T A C G T A A C G T A C G T
A C G T A C G T A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

RFX5/MA0510.2/Jaspar

Match Rank:4
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:AAAGTTATCAAKGAAA--
--NGTTGCCATGGCAACG
 C T G A C G T A C G T A A C T G A C G T C A G T T C G A A G C T A G T C G C T A G C T A C A T G C A T G T C G A C G T A C G T A A C G T A C G T
A C G T A C G T A T G C C T A G A C G T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T C G A G A T C T A C G

RFX2/MA0600.2/Jaspar

Match Rank:5
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:AAAGTTATCAAKGAAA--
--CGTTGCCATGGCAACG
 C T G A C G T A C G T A A C T G A C G T C A G T T C G A A G C T A G T C G C T A G C T A C A T G C A T G T C G A C G T A C G T A A C G T A C G T
A C G T A C G T A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A A G T C T A C G

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.60
Offset:2
Orientation:forward strand
Alignment:AAAGTTATCAAKGAAA
--NGTTGCCATGGCAA
 C T G A C G T A C G T A A C T G A C G T C A G T T C G A A G C T A G T C G C T A G C T A C A T G C A T G T C G A C G T A C G T A
A C G T A C G T A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Rfx1/MA0509.1/Jaspar

Match Rank:7
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:AAAGTTATCAAKGAAA-
---GTTGCCATGGNAAC
 C T G A C G T A C G T A A C T G A C G T C A G T T C G A A G C T A G T C G C T A G C T A C A T G C A T G T C G A C G T A C G T A A C G T
A C G T A C G T A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:8
Score:0.59
Offset:3
Orientation:forward strand
Alignment:AAAGTTATCAAKGAAA--
---GTTGCCATGGCAACM
 C T G A C G T A C G T A A C T G A C G T C A G T T C G A A G C T A G T C G C T A G C T A C A T G C A T G T C G A C G T A C G T A A C G T A C G T
A C G T A C G T A C G T C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:9
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:AAAGTTATCAAKGAAA---
---GTTGCCATGGCAACCG
 C T G A C G T A C G T A A C T G A C G T C A G T T C G A A G C T A G T C G C T A G C T A C A T G C A T G T C G A C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G

PH0071.1_Hoxc6/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-AAAGTTATCAAKGAAA
CAAATTAATTAATAAAA
 A C G T C T G A C G T A C G T A A C T G A C G T C A G T T C G A A G C T A G T C G C T A G C T A C A T G C A T G T C G A C G T A C G T A
A G T C C T G A G C T A T C G A C A G T G A C T G C T A C G T A C G A T C G A T C T G A G T C A A C G T C G T A T C G A T G C A C G T A