Information for 11-TMTCTGKRAGWCA (Motif 14)

A C G T G T C A A C G T A T G C A C G T A C T G A C G T C T G A C G T A A C T G C G A T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A A G T C A C G T A G C T G T C A A G T C C G T A A T C G C G T A A C G T C G T A
p-value:1e-7
log p-value:-1.821e+01
Information Content per bp:1.878
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.77%
Number of Background Sequences with motif9.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets47.8 +/- 23.4bp
Average Position of motif in Background76.7 +/- 10.3bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TMTCTGKRAGWCA-
-AGGTGNCAGACAG
 A C G T G T C A A C G T A T G C A C G T A C T G A C G T C T G A C G T A A C T G C G A T A G T C C G T A A C G T
A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TMTCTGKRAGWCA
-AGGTGHCAGACA
 A C G T G T C A A C G T A T G C A C G T A C T G A C G T C T G A C G T A A C T G C G A T A G T C C G T A
A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.60
Offset:2
Orientation:forward strand
Alignment:TMTCTGKRAGWCA-
--NCTGTCAATCAN
 A C G T G T C A A C G T A T G C A C G T A C T G A C G T C T G A C G T A A C T G C G A T A G T C C G T A A C G T
A C G T A C G T T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:4
Score:0.59
Offset:2
Orientation:forward strand
Alignment:TMTCTGKRAGWCA-
--SCTGTCAVTCAV
 A C G T G T C A A C G T A T G C A C G T A C T G A C G T C T G A C G T A A C T G C G A T A G T C C G T A A C G T
A C G T A C G T T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:5
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TMTCTGKRAGWCA
-GSCTGTCACTCA
 A C G T G T C A A C G T A T G C A C G T A C T G A C G T C T G A C G T A A C T G C G A T A G T C C G T A
A C G T C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:6
Score:0.56
Offset:0
Orientation:forward strand
Alignment:TMTCTGKRAGWCA
GGTCTGGCAT---
 A C G T G T C A A C G T A T G C A C G T A C T G A C G T C T G A C G T A A C T G C G A T A G T C C G T A
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T

PB0142.1_Jundm2_2/Jaspar

Match Rank:7
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:TMTCTGKRAGWCA-----
--NNGGTGACTCATCANN
 A C G T G T C A A C G T A T G C A C G T A C T G A C G T C T G A C G T A A C T G C G A T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A G T G A C T C A T G T C A G A G C T A C T G C G T A A T G C C A G T T G A C C T G A A G C T G A T C T G C A G T C A A C G T

FOS::JUN/MA0099.2/Jaspar

Match Rank:8
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:TMTCTGKRAGWCA
------TGAGTCA
 A C G T G T C A A C G T A T G C A C G T A C T G A C G T C T G A C G T A A C T G C G A T A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T G A C T A T C G G C T A A C T G A C G T G T A C C T G A

Stat6/MA0520.1/Jaspar

Match Rank:9
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---TMTCTGKRAGWCA
ANTTCTCAGGAANNN-
 A C G T A C G T A C G T A C G T G T C A A C G T A T G C A C G T A C T G A C G T C T G A C G T A A C T G C G A T A G T C C G T A
C T G A A C G T A G C T A C G T G T A C G A C T A T G C G C T A C T A G C A T G C G T A C G T A T C G A G C A T T A C G A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:10
Score:0.54
Offset:5
Orientation:forward strand
Alignment:TMTCTGKRAGWCA-
-----AAAAGTCAA
 A C G T G T C A A C G T A T G C A C G T A C T G A C G T C T G A C G T A A C T G C G A T A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A