Information for 15-GCTATGCATG (Motif 11)

A C T G A G T C A C G T C G T A A C G T A C T G A G T C C G T A A C G T A C T G
Reverse Opposite:
A G T C C G T A A C G T A C T G A G T C C G T A A C G T C G T A A C T G A G T C
p-value:1e-7
log p-value:-1.670e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.49%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets56.2 +/- 12.2bp
Average Position of motif in Background50.4 +/- 8.5bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GCTATGCATG
GHATATKCAT-
 A C G T A C T G A G T C A C G T C G T A A C G T A C T G A G T C C G T A A C G T A C T G
C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T

PH0148.1_Pou3f3/Jaspar

Match Rank:2
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GCTATGCATG-----
AAAATATGCATAATAAA
 A C G T A C G T A C T G A G T C A C G T C G T A A C G T A C T G A G T C C G T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GCTATGCATG
GAATATTCAT-
 A C G T A C T G A G T C A C G T C G T A A C G T A C T G A G T C C G T A A C G T A C T G
T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:4
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GCTATGCATG-
TTCATTTGCATAT
 A C G T A C G T A C T G A G T C A C G T C G T A A C G T A C T G A G T C C G T A A C G T A C T G A C G T
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T

PB0170.1_Sox17_2/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GCTATGCATG-----
NTTNTATGAATGTGNNC
 A C G T A C G T A C T G A G T C A C G T C G T A A C G T A C T G A G T C C G T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

PB0178.1_Sox8_2/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GCTATGCATG-
NNTNTCATGAATGT
 A C G T A C G T A C G T A C T G A G T C A C G T C G T A A C G T A C T G A G T C C G T A A C G T A C T G A C G T
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GCTATGCATG---
GCAGCCAAGCGTGACN
 A C G T A C G T A C G T A C T G A G T C A C G T C G T A A C G T A C T G A G T C C G T A A C G T A C T G A C G T A C G T A C G T
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GCTATGCATG
BTVATTWGCATA
 A C G T A C G T A C T G A G T C A C G T C G T A A C G T A C T G A G T C C G T A A C G T A C T G
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:9
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GCTATGCATG--
SCAGYCADGCATGAC
 A C G T A C G T A C G T A C T G A G T C A C G T C G T A A C G T A C T G A G T C C G T A A C G T A C T G A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GCTATGCATG-
-ATTTGCATAA
 A C T G A G T C A C G T C G T A A C G T A C T G A G T C C G T A A C G T A C T G A C G T
A C G T C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A