Information for 6-GCTAATCTGCCCT (Motif 9)

A C T G T A G C G A C T C G T A C G T A A G C T A G T C A C G T A C T G A G T C G T A C A G T C G C A T
Reverse Opposite:
C G T A A C T G A C T G C T A G G T A C C G T A A C T G C T G A A C G T A C G T C G T A A C T G A G T C
p-value:1e-11
log p-value:-2.670e+01
Information Content per bp:1.817
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.5 +/- 19.8bp
Average Position of motif in Background67.3 +/- 19.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:1
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GCTAATCTGCCCT
GCTAATCC-----
 A C T G T A G C G A C T C G T A C G T A A G C T A G T C A C G T A C T G A G T C G T A C A G T C G C A T
A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T A C G T A C G T A C G T

PH0139.1_Pitx3/Jaspar

Match Rank:2
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----GCTAATCTGCCCT
GNNAGCTAATCCCCCN-
 A C G T A C G T A C G T A C G T A C T G T A G C G A C T C G T A C G T A A G C T A G T C A C G T A C T G A G T C G T A C A G T C G C A T
A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:3
Score:0.60
Offset:6
Orientation:forward strand
Alignment:GCTAATCTGCCCT--
------CTGCCCGCA
 A C T G T A G C G A C T C G T A C G T A A G C T A G T C A C G T A C T G A G T C G T A C A G T C G C A T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A

GSC/MA0648.1/Jaspar

Match Rank:4
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GCTAATCTGCCCT
GCTAATCCCC---
 A C T G T A G C G A C T C G T A C G T A A G C T A G T C A C G T A C T G A G T C G T A C A G T C G C A T
T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C A C G T A C G T A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:5
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GCTAATCTGCCCT
-YTAATCCY----
 A C T G T A G C G A C T C G T A C G T A A G C T A G T C A C G T A C T G A G T C G T A C A G T C G C A T
A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C A C G T A C G T A C G T A C G T

Crx/MA0467.1/Jaspar

Match Rank:6
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GCTAATCTGCCCT
-CTAATCCTCTT-
 A C T G T A G C G A C T C G T A C G T A A G C T A G T C A C G T A C T G A G T C G T A C A G T C G C A T
A C G T G A T C C G A T C T G A C G T A A C G T A G T C G A T C A G C T G A T C G A C T A G C T A C G T

GSC2/MA0891.1/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GCTAATCTGCCCT
CCTAATCCGC---
 A C T G T A G C G A C T C G T A C G T A A G C T A G T C A C G T A C T G A G T C G T A C A G T C G C A T
T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C A C G T A C G T A C G T

OTX1/MA0711.1/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GCTAATCTGCCCT
-TTAATCCG----
 A C T G T A G C G A C T C G T A C G T A A G C T A G T C A C G T A C T G A G T C G T A C A G T C G C A T
A C G T G A C T G C A T C G T A C G T A C A G T T A G C A T G C A T C G A C G T A C G T A C G T A C G T

OTX2/MA0712.1/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GCTAATCTGCCCT
-TTAATCCT----
 A C T G T A G C G A C T C G T A C G T A A G C T A G T C A C G T A C T G A G T C G T A C A G T C G C A T
A C G T G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T A C G T A C G T A C G T A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GCTAATCTGCCCT
NYTAATCCYB---
 A C T G T A G C G A C T C G T A C G T A A G C T A G T C A C G T A C T G A G T C G T A C A G T C G C A T
A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T A C G T A C G T A C G T