Information for 15-CYNCRTKSCA (Motif 26)

A G T C A G T C G T C A A G T C C T A G C A G T A C G T T A C G A G T C C G T A
Reverse Opposite:
A C G T A C T G A T G C T G C A G T C A G A T C C T A G C A G T C T A G A C T G
p-value:1e-8
log p-value:-1.990e+01
Information Content per bp:1.656
Number of Target Sequences with motif54.0
Percentage of Target Sequences with motif6.32%
Number of Background Sequences with motif1087.7
Percentage of Background Sequences with motif2.55%
Average Position of motif in Targets48.3 +/- 26.0bp
Average Position of motif in Background49.4 +/- 35.7bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CYNCRTKSCA-
---CTTGGCAA
 A G T C A G T C G T C A A G T C C T A G C A G T A C G T T A C G A G T C C G T A A C G T
A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

ZNF143/MA0088.2/Jaspar

Match Rank:2
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CYNCRTKSCA---
TACCCACAATGCATTG
 A C G T A C G T A C G T A G T C A G T C G T C A A G T C C T A G C A G T A C G T T A C G A G T C C G T A A C G T A C G T A C G T
A G C T C G T A G T A C G T A C A G T C C T G A A G T C T C G A C T G A C G A T T C A G A G T C G T C A G A C T G A C T C T A G

POL002.1_INR/Jaspar

Match Rank:3
Score:0.58
Offset:7
Orientation:forward strand
Alignment:CYNCRTKSCA-----
-------TCAGTCTT
 A G T C A G T C G T C A A G T C C T A G C A G T A C G T T A C G A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T

TFAP2B/MA0811.1/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CYNCRTKSCA
TGCCCCAGGGCA
 A C G T A C G T A G T C A G T C G T C A A G T C C T A G C A G T A C G T T A C G A G T C C G T A
G A C T T A C G A T G C G A T C A G T C A G T C T C G A T C A G T C A G T A C G A T G C C T G A

NFIA/MA0670.1/Jaspar

Match Rank:5
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CYNCRTKSCA--
--NNTTGGCANN
 A G T C A G T C G T C A A G T C C T A G C A G T A C G T T A C G A G T C C G T A A C G T A C G T
A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

TFAP2C/MA0524.2/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CYNCRTKSCA
TGCCCCAGGGCA
 A C G T A C G T A G T C A G T C G T C A A G T C C T A G C A G T A C G T T A C G A G T C C G T A
G A C T T A C G T A G C G A T C A G T C A G T C T C G A T C A G C T A G T A C G A T G C C T G A

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CYNCRTKSCA--
---CGTGCCAAG
 A G T C A G T C G T C A A G T C C T A G C A G T A C G T T A C G A G T C C G T A A C G T A C G T
A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CYNCRTKSCA
TGCCCCCGGGCA
 A C G T A C G T A G T C A G T C G T C A A G T C C T A G C A G T A C G T T A C G A G T C C G T A
G A C T T A C G T A G C A G T C A G T C A G T C T G A C T C A G T C A G A T C G A T G C C T G A

MEIS3/MA0775.1/Jaspar

Match Rank:9
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CYNCRTKSCA--
----TTGACAGG
 A G T C A G T C G T C A A G T C C T A G C A G T A C G T T A C G A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G

PB0086.1_Tcfap2b_1/Jaspar

Match Rank:10
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CYNCRTKSCA-
TTGCCCTAGGGCAT
 A C G T A C G T A C G T A G T C A G T C G T C A A G T C C T A G C A G T A C G T T A C G A G T C C G T A A C G T
C G A T G A C T T A C G A T G C A G T C A G T C A G C T T C G A T C A G C T A G A T C G A T G C C T G A C G A T