Information for 11-GCCASWSTSCACG (Motif 19)

A C T G A G T C A G T C C G T A A T G C C G T A A T C G C A G T A T C G A G T C C G T A A G T C C T A G
Reverse Opposite:
A G T C A C T G A C G T A C T G A T G C G C T A A T G C C G A T A T C G A C G T A C T G A C T G A G T C
p-value:1e-9
log p-value:-2.243e+01
Information Content per bp:1.870
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif7.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets55.8 +/- 16.2bp
Average Position of motif in Background60.1 +/- 31.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:1
Score:0.59
Offset:8
Orientation:reverse strand
Alignment:GCCASWSTSCACG---
--------GCACGTNC
 A C T G A G T C A G T C C G T A A T G C C G T A A T C G C A G T A T C G A G T C C G T A A G T C C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----GCCASWSTSCACG
CANAGNNCAAAGTCCA--
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C C G T A A T G C C G T A A T C G C A G T A T C G A G T C C G T A A G T C C T A G
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:3
Score:0.57
Offset:8
Orientation:reverse strand
Alignment:GCCASWSTSCACG---
--------GCACGTAY
 A C T G A G T C A G T C C G T A A T G C C G T A A T C G C A G T A T C G A G T C C G T A A G T C C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T

ZNF354C/MA0130.1/Jaspar

Match Rank:4
Score:0.56
Offset:6
Orientation:forward strand
Alignment:GCCASWSTSCACG
------ATCCAC-
 A C T G A G T C A G T C C G T A A T G C C G T A A T C G C A G T A T C G A G T C C G T A A G T C C T A G
A C G T A C G T A C G T A C G T A C G T A C G T T G C A G C A T A G T C A G T C C G T A A T G C A C G T

PB0111.1_Bhlhb2_2/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GCCASWSTSCACG----------
ACCGCCNTCCACGTGTANNGACA
 A C T G A G T C A G T C C G T A A T G C C G T A A T C G C A G T A T C G A G T C C G T A A G T C C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G T A G A T C G A T C C A T G T A G C G A T C G A C T C A G T T G A C G T A C C T G A A G T C T C A G G A C T A C T G A C G T G T C A C T G A G A C T T A C G C T G A G A T C C T G A

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GCCASWSTSCACG
TGCCAA--------
 A C G T A C T G A G T C A G T C C G T A A T G C C G T A A T C G C A G T A T C G A G T C C G T A A G T C C T A G
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:7
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GCCASWSTSCACG--
GGCAAAAGTCCAATAA
 A C G T A C T G A G T C A G T C C G T A A T G C C G T A A T C G C A G T A T C G A G T C C G T A A G T C C T A G A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

Hes1/MA1099.1/Jaspar

Match Rank:8
Score:0.56
Offset:7
Orientation:forward strand
Alignment:GCCASWSTSCACG----
-------GGCACGCGTC
 A C T G A G T C A G T C C G T A A T G C C G T A A T C G C A G T A T C G A G T C C G T A A G T C C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A C G G A T C C T G A A G T C T C A G G A T C A C T G G A C T G T A C

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:9
Score:0.55
Offset:9
Orientation:reverse strand
Alignment:GCCASWSTSCACG--
---------CACGCA
 A C T G A G T C A G T C C G T A A T G C C G T A A T C G C A G T A T C G A G T C C G T A A G T C C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A

NFIX/MA0671.1/Jaspar

Match Rank:10
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---GCCASWSTSCACG
CGTGCCAAG-------
 A C G T A C G T A C G T A C T G A G T C A G T C C G T A A T G C C G T A A T C G C A G T A T C G A G T C C G T A A G T C C T A G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T