Information for 1-YNSKCACGTA (Motif 1)

A G C T G T A C A T C G C A T G A T G C C G T A A T G C T C A G A G C T G T C A
Reverse Opposite:
C A G T T C G A A G T C A T C G A C G T A T C G G T A C T A G C C A T G T C G A
p-value:1e-106
log p-value:-2.444e+02
Information Content per bp:1.622
Number of Target Sequences with motif289.0
Percentage of Target Sequences with motif33.84%
Number of Background Sequences with motif3269.6
Percentage of Background Sequences with motif7.66%
Average Position of motif in Targets53.5 +/- 21.3bp
Average Position of motif in Background49.8 +/- 42.3bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:1
Score:0.97
Offset:3
Orientation:reverse strand
Alignment:YNSKCACGTA-
---GCACGTAY
 A G C T G T A C A T C G C A T G A T G C C G T A A T G C T C A G A G C T G T C A A C G T
A C G T A C G T A C G T C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:2
Score:0.97
Offset:2
Orientation:reverse strand
Alignment:YNSKCACGTA
--BGCACGTA
 A G C T G T A C A T C G C A T G A T G C C G T A A T G C T C A G A G C T G T C A
A C G T A C G T A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:3
Score:0.96
Offset:3
Orientation:forward strand
Alignment:YNSKCACGTA---
---GCACGTACCC
 A G C T G T A C A T C G C A T G A T G C C G T A A T G C T C A G A G C T G T C A A C G T A C G T A C G T
A C G T A C G T A C G T C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:4
Score:0.95
Offset:3
Orientation:reverse strand
Alignment:YNSKCACGTA-
---GCACGTNC
 A G C T G T A C A T C G C A T G A T G C C G T A A T G C T C A G A G C T G T C A A C G T
A C G T A C G T A C G T A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C

Arnt/MA0004.1/Jaspar

Match Rank:5
Score:0.85
Offset:4
Orientation:reverse strand
Alignment:YNSKCACGTA
----CACGTG
 A G C T G T A C A T C G C A T G A T G C C G T A A T G C T C A G A G C T G T C A
A C G T A C G T A C G T A C G T A G T C C G T A A G T C A C T G A G C T A C T G

NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer

Match Rank:6
Score:0.81
Offset:4
Orientation:reverse strand
Alignment:YNSKCACGTA--
----CACGTGBN
 A G C T G T A C A T C G C A T G A T G C C G T A A T G C T C A G A G C T G T C A A C G T A C G T
A C G T A C G T A C G T A C G T G T A C C T G A A G T C C T A G G C A T C A T G A C G T G C T A

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:7
Score:0.81
Offset:1
Orientation:forward strand
Alignment:YNSKCACGTA-
-TBGCACGCAA
 A G C T G T A C A T C G C A T G A T G C C G T A A T G C T C A G A G C T G T C A A C G T
A C G T G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A

bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.81
Offset:1
Orientation:reverse strand
Alignment:YNSKCACGTA-
-NGKCACGTGM
 A G C T G T A C A T C G C A T G A T G C C G T A A T G C T C A G A G C T G T C A A C G T
A C G T T C G A T C A G C A T G A G T C C G T A A G T C C T A G A C G T A C T G G T A C

MNT/MA0825.1/Jaspar

Match Rank:9
Score:0.81
Offset:2
Orientation:reverse strand
Alignment:YNSKCACGTA--
--NGCACGTGNT
 A G C T G T A C A T C G C A T G A T G C C G T A A T G C T C A G A G C T G T C A A C G T A C G T
A C G T A C G T C T A G A C T G G T A C G T C A A G T C T C A G C G A T C A T G A T C G G A C T

CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:10
Score:0.81
Offset:2
Orientation:forward strand
Alignment:YNSKCACGTA
--GHCACGTG
 A G C T G T A C A T C G C A T G A T G C C G T A A T G C T C A G A G C T G T C A
A C G T A C G T C T A G G C A T G A T C C G T A A G T C T C A G G A C T C T A G