Information for 5-AGATGTTAAT (Motif 16)

C G T A A T C G C G T A A C G T A C T G A C G T A C G T C G T A C G T A A C G T
Reverse Opposite:
C G T A A C G T A C G T C G T A C G T A A G T C C G T A A C G T A T G C A C G T
p-value:1e-4
log p-value:-1.063e+01
Information Content per bp:1.967
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif1.20%
Number of Background Sequences with motif10.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets40.7 +/- 30.1bp
Average Position of motif in Background57.5 +/- 20.5bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:1
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:AGATGTTAAT
AGGTGTTAAT
 C G T A A T C G C G T A A C G T A C T G A C G T A C G T C G T A C G T A A C G T
C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.74
Offset:1
Orientation:forward strand
Alignment:AGATGTTAAT---
-TATGCWAATBAV
 C G T A A T C G C G T A A C G T A C T G A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

Arid3b/MA0601.1/Jaspar

Match Rank:3
Score:0.72
Offset:2
Orientation:forward strand
Alignment:AGATGTTAAT---
--ATATTAATTAA
 C G T A A T C G C G T A A C G T A C T G A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T C G T A C G A T G C T A C G A T A C G T C G T A C G T A C G A T G C A T C G T A C G T A

POU3F1/MA0786.1/Jaspar

Match Rank:4
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AGATGTTAAT--
TTATGCAAATTA
 C G T A A T C G C G T A A C G T A C T G A C G T A C G T C G T A C G T A A C G T A C G T A C G T
C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.69
Offset:1
Orientation:forward strand
Alignment:AGATGTTAAT---
-WATGCAAATGAG
 C G T A A T C G C G T A A C G T A C T G A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

POU3F2/MA0787.1/Jaspar

Match Rank:6
Score:0.69
Offset:0
Orientation:forward strand
Alignment:AGATGTTAAT--
TTATGCAAATTA
 C G T A A T C G C G T A A C G T A C T G A C G T A C G T C G T A C G T A A C G T A C G T A C G T
C G A T G C A T T C G A G A C T C A T G A G T C G C T A C G T A G C T A C G A T A C G T G C T A

ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---AGATGTTAAT
TCCAGATGTT---
 A C G T A C G T A C G T C G T A A T C G C G T A A C G T A C T G A C G T A C G T C G T A C G T A A C G T
A C G T T G A C A G T C C G T A A T C G G T C A A C G T A T C G A G C T A C G T A C G T A C G T A C G T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:8
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-AGATGTTAAT
AAGGTGTKAA-
 A C G T C G T A A T C G C G T A A C G T A C T G A C G T A C G T C G T A C G T A A C G T
C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A A C G T

POU3F3/MA0788.1/Jaspar

Match Rank:9
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AGATGTTAAT--
ATTATGCTAATTT
 A C G T C G T A A T C G C G T A A C G T A C T G A C G T A C G T C G T A C G T A A C G T A C G T A C G T
C G T A C G A T C G A T C G T A A C G T C A T G A G T C G C A T C G T A C T G A G C A T C G A T C G A T

POU5F1B/MA0792.1/Jaspar

Match Rank:10
Score:0.68
Offset:1
Orientation:forward strand
Alignment:AGATGTTAAT
-TATGCAAAT
 C G T A A T C G C G T A A C G T A C T G A C G T A C G T C G T A C G T A A C G T
A C G T G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T