Information for 4-RRTGACCTCACAGYCT (Motif 4)

C T G A C T A G A C G T A C T G C G T A A T G C A G T C A C G T A T G C T C G A G T A C T G C A T A C G G A T C T A G C G A C T
Reverse Opposite:
C T G A A T C G C T A G A T G C A C G T C A T G A G C T A T C G C G T A T C A G T A C G G C A T T G A C G T C A A G T C A G C T
p-value:1e-12
log p-value:-2.896e+01
Information Content per bp:1.625
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif4.90%
Number of Background Sequences with motif100.0
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets58.4 +/- 18.8bp
Average Position of motif in Background51.4 +/- 26.4bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-RRTGACCTCACAGYCT
NGATGACGTCAT-----
 A C G T C T G A C T A G A C G T A C T G C G T A A T G C A G T C A C G T A T G C T C G A G T A C T G C A T A C G G A T C T A G C G A C T
C T A G T C A G T C G A C G A T C A T G C T G A A G T C T C A G G A C T T G A C C G T A A G C T A C G T A C G T A C G T A C G T A C G T

Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer

Match Rank:2
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-RRTGACCTCACAGYCT
NRRTGACGTCAT-----
 A C G T C T G A C T A G A C G T A C T G C G T A A T G C A G T C A C G T A T G C T C G A G T A C T G C A T A C G G A T C T A G C G A C T
A T G C T C A G T C G A G C A T A C T G C G T A A G T C T C A G G A C T T G A C C G T A A G C T A C G T A C G T A C G T A C G T A C G T

Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer

Match Rank:3
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-RRTGACCTCACAGYCT
NGRTGACGTCAY-----
 A C G T C T G A C T A G A C G T A C T G C G T A A T G C A G T C A C G T A T G C T C G A G T A C T G C A T A C G G A T C T A G C G A C T
T A G C C T A G T C G A G A C T A C T G C T G A A G T C T C A G G C A T T G A C C T G A A G C T A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:RRTGACCTCACAGYCT
--TGACCTYA------
 C T G A C T A G A C G T A C T G C G T A A T G C A G T C A C G T A T G C T C G A G T A C T G C A T A C G G A T C T A G C G A C T
A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

JunD(bZIP)/K562-JunD-ChIP-Seq/Homer

Match Rank:5
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-RRTGACCTCACAGYCT
NGATGACGTCAT-----
 A C G T C T G A C T A G A C G T A C T G C G T A A T G C A G T C A C G T A T G C T C G A G T A C T G C A T A C G G A T C T A G C G A C T
A G C T C T A G T C G A A C G T A C T G C T G A A G T C T C A G A G C T G T A C C G T A A G C T A C G T A C G T A C G T A C G T A C G T

PB0004.1_Atf1_1/Jaspar

Match Rank:6
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--RRTGACCTCACAGYCT
NCGATGACGTCATCGN--
 A C G T A C G T C T G A C T A G A C G T A C T G C G T A A T G C A G T C A C G T A T G C T C G A G T A C T G C A T A C G G A T C T A G C G A C T
G A C T G A T C C A T G T C G A A G C T A C T G C G T A A G T C C T A G G C A T G T A C C T G A A G C T G T A C T C A G G A C T A C G T A C G T

CRE(bZIP)/Promoter/Homer

Match Rank:7
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-RRTGACCTCACAGYCT
CGGTGACGTCAC-----
 A C G T C T G A C T A G A C G T A C T G C G T A A T G C A G T C A C G T A T G C T C G A G T A C T G C A T A C G G A T C T A G C G A C T
A T G C A T C G T A C G A G C T A T C G C T G A A G T C C T A G A G C T A T G C C T G A A T G C A C G T A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:8
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:RRTGACCTCACAGYCT
-GTGACCTT-------
 C T G A C T A G A C G T A C T G C G T A A T G C A G T C A C G T A T G C T C G A G T A C T G C A T A C G G A T C T A G C G A C T
A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

JUND(var.2)/MA0492.1/Jaspar

Match Rank:9
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---RRTGACCTCACAGYCT
AAAGATGATGTCATC----
 A C G T A C G T A C G T C T G A C T A G A C G T A C T G C G T A A T G C A G T C A C G T A T G C T C G A G T A C T G C A T A C G G A T C T A G C G A C T
C G T A C T G A C G T A T C A G T C G A A C G T A C T G C G T A A G C T T C A G A G C T T G A C C G T A A G C T T G A C A C G T A C G T A C G T A C G T

Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.64
Offset:0
Orientation:forward strand
Alignment:RRTGACCTCACAGYCT
GATGACGTCA------
 C T G A C T A G A C G T A C T G C G T A A T G C A G T C A C G T A T G C T C G A G T A C T G C A T A C G G A T C T A G C G A C T
T A C G T C G A G A C T A C T G C T G A A G T C T C A G G A C T T G A C C T G A A C G T A C G T A C G T A C G T A C G T A C G T