Information for 3-AAKCACACRAMCCTGA (Motif 3)

C G T A G C T A C A G T A G T C G T C A G T A C C G T A A T G C C T A G G C T A G T A C T G A C G T A C C G A T A T C G C T G A
Reverse Opposite:
G A C T A T G C G C T A A C T G A C T G C A T G C G A T G A T C A T C G A C G T A C T G A C G T A C T G G T C A C G A T A C G T
p-value:1e-12
log p-value:-2.935e+01
Information Content per bp:1.645
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif5.31%
Number of Background Sequences with motif125.1
Percentage of Background Sequences with motif0.26%
Average Position of motif in Targets38.8 +/- 21.2bp
Average Position of motif in Background51.7 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:1
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AAKCACACRAMCCTGA
AAACCACANN-------
 A C G T C G T A G C T A C A G T A G T C G T C A G T A C C G T A A T G C C T A G G C T A G T A C T G A C G T A C C G A T A T C G C T G A
G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:2
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AAKCACACRAMCCTGA
CGAAGCACACAAAATA--
 A C G T A C G T C G T A G C T A C A G T A G T C G T C A G T A C C G T A A T G C C T A G G C T A G T A C T G A C G T A C C G A T A T C G C T G A
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A A C G T A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-AAKCACACRAMCCTGA
AAACCACAGAN------
 A C G T C G T A G C T A C A G T A G T C G T C A G T A C C G T A A T G C C T A G G C T A G T A C T G A C G T A C C G A T A T C G C T G A
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T A C G T A C G T A C G T A C G T A C G T

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:4
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AAKCACACRAMCCTGA
NAAACCACAG--------
 A C G T A C G T C G T A G C T A C A G T A G T C G T C A G T A C C G T A A T G C C T A G G C T A G T A C T G A C G T A C C G A T A T C G C T G A
T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:5
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AAKCACACRAMCCTGA
ATTTCCCAGVAKSCY--
 A C G T C G T A G C T A C A G T A G T C G T C A G T A C C G T A A T G C C T A G G C T A G T A C T G A C G T A C C G A T A T C G C T G A
T G C A G C A T A G C T G C A T A G T C A G T C A G T C C T G A A C T G T C G A T C G A C A G T A T C G A G T C G A T C A C G T A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:6
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AAKCACACRAMCCTGA
AAACCACAGC-------
 A C G T C G T A G C T A C A G T A G T C G T C A G T A C C G T A A T G C C T A G G C T A G T A C T G A C G T A C C G A T A T C G C T G A
G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AAKCACACRAMCCTGA
NWAACCACADNN------
 A C G T A C G T C G T A G C T A C A G T A G T C G T C A G T A C C G T A A T G C C T A G G C T A G T A C T G A C G T A C C G A T A T C G C T G A
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T A C G T A C G T A C G T A C G T

Gfi1/MA0038.1/Jaspar

Match Rank:8
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--AAKCACACRAMCCTGA
CAAATCACTG--------
 A C G T A C G T C G T A G C T A C A G T A G T C G T C A G T A C C G T A A T G C C T A G G C T A G T A C T G A C G T A C C G A T A T C G C T G A
A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Gfi1b/MA0483.1/Jaspar

Match Rank:9
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AAKCACACRAMCCTGA
AAATCACAGCA------
 A C G T C G T A G C T A C A G T A G T C G T C A G T A C C G T A A T G C C T A G G C T A G T A C T G A C G T A C C G A T A T C G C T G A
T G C A C G T A C T G A A G C T A G T C G C T A T A G C C G T A C T A G G A T C G C T A A C G T A C G T A C G T A C G T A C G T A C G T

RUNX3/MA0684.1/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AAKCACACRAMCCTGA
AAACCGCAAA-------
 A C G T C G T A G C T A C A G T A G T C G T C A G T A C C G T A A T G C C T A G G C T A G T A C T G A C G T A C C G A T A T C G C T G A
G C T A T C G A T G C A G T A C A T G C T C A G A T G C T G C A T C G A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T