Information for 3-CGCAGATTCAADT (Motif 4)

G T A C A C T G A G T C C G T A A C T G C G T A A C G T C G A T G A T C C G T A G T C A C G T A A C G T
Reverse Opposite:
C G T A G A C T A C G T A C G T C T A G C G T A C G T A C G A T A G T C A C G T A C T G A G T C A C T G
p-value:1e-14
log p-value:-3.327e+01
Information Content per bp:1.846
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.07%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets48.8 +/- 14.2bp
Average Position of motif in Background24.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CGCAGATTCAADT
--CGGTTTCAAA-
 G T A C A C T G A G T C C G T A A C T G C G T A A C G T C G A T G A T C C G T A G T C A C G T A A C G T
A C G T A C G T T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:2
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CGCAGATTCAADT
CGCAGCTGCG---
 G T A C A C T G A G T C C G T A A C T G C G T A A C G T C G A T G A T C C G T A G T C A C G T A A C G T
T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G A C G T A C G T A C G T

LIN54/MA0619.1/Jaspar

Match Rank:3
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:CGCAGATTCAADT
----NATTCAAAT
 G T A C A C T G A G T C C G T A A C T G C G T A A C G T C G A T G A T C C G T A G T C A C G T A A C G T
A C G T A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T

GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:4
Score:0.52
Offset:2
Orientation:forward strand
Alignment:CGCAGATTCAADT----
--NAGATWNBNATCTNN
 G T A C A C T G A G T C C G T A A C T G C G T A A C G T C G A T G A T C C G T A G T C A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A T G C C G T A A C T G C G T A A C G T G C T A T C G A A G C T C G A T C G T A A C G T A G T C C G A T A C T G G A T C

IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer

Match Rank:5
Score:0.52
Offset:3
Orientation:forward strand
Alignment:CGCAGATTCAADT--
---AGTTTCAKTTTC
 G T A C A C T G A G T C C G T A A C T G C G T A A C G T C G A T G A T C C G T A G T C A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C T G A T A C G G C A T A G C T A G C T A G T C T C G A A C T G C A G T A G C T A G C T G A T C

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.52
Offset:3
Orientation:forward strand
Alignment:CGCAGATTCAADT
---ATATGCAAAT
 G T A C A C T G A G T C C G T A A C T G C G T A A C G T C G A T G A T C C G T A G T C A C G T A A C G T
A C G T A C G T A C G T G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T

ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:7
Score:0.52
Offset:3
Orientation:forward strand
Alignment:CGCAGATTCAADT--
---AGTTTCAGTTTC
 G T A C A C T G A G T C C G T A A C T G C G T A A C G T C G A T G A T C C G T A G T C A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C T G A A T C G A G C T A G C T A C G T T A G C C T G A T A C G C G A T A C G T G A C T A G T C

STAT1::STAT2/MA0517.1/Jaspar

Match Rank:8
Score:0.51
Offset:1
Orientation:forward strand
Alignment:CGCAGATTCAADT---
-TCAGTTTCATTTTCC
 G T A C A C T G A G T C C G T A A C T G C G T A A C G T C G A T G A T C C G T A G T C A C G T A A C G T A C G T A C G T A C G T
A C G T C A G T G A T C C T G A T A C G A G C T G C A T A G C T A G T C C T G A A C G T A G C T G C A T A G C T G A T C A G T C

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:CGCAGATTCAADT
CACAGN-------
 G T A C A C T G A G T C C G T A A C T G C G T A A C G T C G A T G A T C C G T A G T C A C G T A A C G T
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer

Match Rank:10
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:CGCAGATTCAADT--
---ASTTTCACTTCC
 G T A C A C T G A G T C C G T A A C T G C G T A A C G T C G A T G A T C C G T A G T C A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C T G A A T G C G C A T G A C T G A C T A G T C G C T A A T G C G C A T C G A T A G T C G A T C