Information for 10-CTGAGGGCAG (Motif 29)

T G A C C A G T A T C G G C T A C T A G C T A G A C T G A T G C G C T A A C T G
Reverse Opposite:
T G A C C G A T A T C G T G A C A G T C A G T C C G A T A T G C G T C A A C T G
p-value:1e-6
log p-value:-1.604e+01
Information Content per bp:1.816
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif4.99%
Number of Background Sequences with motif738.3
Percentage of Background Sequences with motif1.55%
Average Position of motif in Targets55.9 +/- 22.4bp
Average Position of motif in Background50.7 +/- 28.8bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THAP1/MA0597.1/Jaspar

Match Rank:1
Score:0.79
Offset:1
Orientation:reverse strand
Alignment:CTGAGGGCAG
-TNNGGGCAG
 T G A C C A G T A T C G G C T A C T A G C T A G A C T G A T G C G C T A A C T G
A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--CTGAGGGCAG
GCCTCAGGGCAT
 A C G T A C G T T G A C C A G T A T C G G C T A C T A G C T A G A C T G A T G C G C T A A C T G
A T C G A G T C A G T C A G C T A T G C C T G A C T A G A C T G A T C G G T A C G C T A C G A T

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:3
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----CTGAGGGCAG
TCACCTCTGGGCAG
 A C G T A C G T A C G T A C G T T G A C C A G T A T C G G C T A C T A G C T A G A C T G A T G C G C T A A C T G
G A C T G T A C C T G A A G T C G A T C A G C T A T G C G C A T C T A G C T A G C A T G A G T C C G T A A C T G

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:4
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CTGAGGGCAG
SCCTSAGGSCAW
 A C G T A C G T T G A C C A G T A T C G G C T A C T A G C T A G A C T G A T G C G C T A A C T G
A T C G A G T C A G T C G A C T A T G C C T G A C T A G A C T G T A C G G T A C C T G A C G A T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:5
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CTGAGGGCAG
-TRAGGTCA-
 T G A C C A G T A T C G G C T A C T A G C T A G A C T G A T G C G C T A A C T G
A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CTGAGGGCAG
CAAAGGTCAG
 T G A C C A G T A T C G G C T A C T A G C T A G A C T G A T G C G C T A A C T G
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:7
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CTGAGGGCAG
TGCCCNGGGGCA-
 A C G T A C G T A C G T T G A C C A G T A T C G G C T A C T A G C T A G A C T G A T G C G C T A A C T G
G A C T T A C G T A G C A G T C A G T C A C T G T C A G T C A G T C A G A T C G A T G C C T G A A C G T

PB0086.1_Tcfap2b_1/Jaspar

Match Rank:8
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CTGAGGGCAG
TTGCCCTAGGGCAT
 A C G T A C G T A C G T A C G T T G A C C A G T A T C G G C T A C T A G C T A G A C T G A T G C G C T A A C T G
C G A T G A C T T A C G A T G C A G T C A G T C A G C T T C G A T C A G C T A G A T C G A T G C C T G A C G A T

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:9
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CTGAGGGCAG
TGCCCTGAGGGCA-
 A C G T A C G T A C G T A C G T T G A C C A G T A T C G G C T A C T A G C T A G A C T G A T G C G C T A A C T G
G C A T A T C G A G T C A G T C A G T C A G C T A T C G T C G A T C A G A C T G A C T G A T G C C G T A A C G T

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:10
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----CTGAGGGCAG
TGCCCNNAGGGCA-
 A C G T A C G T A C G T A C G T T G A C C A G T A T C G G C T A C T A G C T A G A C T G A T G C G C T A A C T G
G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A A C G T