Information for 16-KAARCCTGGCAGT (Motif 20)

A C T G T C G A G T C A C T G A A G T C A G T C C G A T A C T G A C T G A G T C G T C A C T A G A C G T
Reverse Opposite:
T C G A A G T C C A G T A C T G T A G C A G T C C G T A C T A G A C T G A G C T C A G T A C G T T G A C
p-value:1e-8
log p-value:-2.051e+01
Information Content per bp:1.730
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif2.50%
Number of Background Sequences with motif133.4
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets44.6 +/- 23.8bp
Average Position of motif in Background55.8 +/- 31.4bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.72
Offset:4
Orientation:reverse strand
Alignment:KAARCCTGGCAGT
----CTTGGCAA-
 A C T G T C G A G T C A C T G A A G T C A G T C C G A T A C T G A C T G A G T C G T C A C T A G A C G T
A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T

PKNOX2/MA0783.1/Jaspar

Match Rank:2
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-KAARCCTGGCAGT
TGACACCTGTCA--
 A C G T A C T G T C G A G T C A C T G A A G T C A G T C C G A T A C T G A C T G A G T C G T C A C T A G A C G T
G A C T A C T G C T G A A G T C C T G A A T G C G T A C G C A T C T A G G A C T A T G C G C T A A C G T A C G T

ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer

Match Rank:3
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-KAARCCTGGCAGT
RYHYACCTGB----
 A C G T A C T G T C G A G T C A C T G A A G T C A G T C C G A T A C T G A C T G A G T C G T C A C T A G A C G T
T C A G A G C T G C T A A G T C C G T A G T A C A T G C A C G T A C T G A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:KAARCCTGGCAGT
----NTTGGCANN
 A C T G T C G A G T C A C T G A A G T C A G T C C G A T A C T G A C T G A G T C G T C A C T A G A C G T
A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

ID4/MA0824.1/Jaspar

Match Rank:5
Score:0.67
Offset:0
Orientation:forward strand
Alignment:KAARCCTGGCAGT
TACACCTGTC---
 A C T G T C G A G T C A C T G A A G T C A G T C C G A T A C T G A C T G A G T C G T C A C T A G A C G T
C A G T T C G A A G T C C T G A A T G C T A G C C G A T T C A G A G C T G A T C A C G T A C G T A C G T

PKNOX1/MA0782.1/Jaspar

Match Rank:6
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-KAARCCTGGCAGT
TGACACCTGTCA--
 A C G T A C T G T C G A G T C A C T G A A G T C A G T C C G A T A C T G A C T G A G T C G T C A C T A G A C G T
G C A T A T C G C G T A A G T C T C G A A T G C G T A C G A C T C A T G G A C T A T G C C T G A A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.66
Offset:5
Orientation:forward strand
Alignment:KAARCCTGGCAGT
-----TTGGCA--
 A C T G T C G A G T C A C T G A A G T C A G T C C G A T A C T G A C T G A G T C G T C A C T A G A C G T
A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:8
Score:0.64
Offset:3
Orientation:forward strand
Alignment:KAARCCTGGCAGT
---VGCTGWCAVB
 A C T G T C G A G T C A C T G A A G T C A G T C C G A T A C T G A C T G A G T C G T C A C T A G A C G T
A C G T A C G T A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C

SNAI2/MA0745.1/Jaspar

Match Rank:9
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:KAARCCTGGCAGT
-NCACCTGTN---
 A C T G T C G A G T C A C T G A A G T C A G T C C G A T A C T G A C T G A G T C G T C A C T A G A C G T
A C G T T C G A G T A C C T G A G A T C G A T C C G A T C A T G G A C T G A C T A C G T A C G T A C G T

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.63
Offset:0
Orientation:forward strand
Alignment:KAARCCTGGCAGT
NNCACCTGNN---
 A C T G T C G A G T C A C T G A A G T C A G T C C G A T A C T G A C T G A G T C G T C A C T A G A C G T
A T G C T G C A A G T C C G T A A G T C A G T C A C G T A C T G A T G C G T C A A C G T A C G T A C G T