Information for 5-GAAGGYCACCTCYGGG (Motif 5)

A C T G G C T A C T G A A T C G A C T G A G T C A G T C C G T A A G T C T A G C C A G T A T G C G A T C A C T G A C T G T A C G
Reverse Opposite:
A T G C G T A C T A G C C T A G A T C G G T C A A T C G T A C G A C G T A C T G T C A G G T A C A T G C A G C T C A G T T A G C
p-value:1e-14
log p-value:-3.236e+01
Information Content per bp:1.699
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.90%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets46.7 +/- 28.3bp
Average Position of motif in Background69.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR4A2/MA0160.1/Jaspar

Match Rank:1
Score:0.73
Offset:1
Orientation:forward strand
Alignment:GAAGGYCACCTCYGGG
-AAGGTCAC-------
 A C T G G C T A C T G A A T C G A C T G A G T C A G T C C G T A A G T C T A G C C A G T A T G C G A T C A C T G A C T G T A C G
A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GAAGGYCACCTCYGGG
TCAAGGTCAN-------
 A C G T A C T G G C T A C T G A A T C G A C T G A G T C A G T C C G T A A G T C T A G C C A G T A T G C G A T C A C T G A C T G T A C G
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Esrrg/MA0643.1/Jaspar

Match Rank:3
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GAAGGYCACCTCYGGG
TCAAGGTCAT-------
 A C G T A C T G G C T A C T G A A T C G A C T G A G T C A G T C C G T A A G T C T A G C C A G T A T G C G A T C A C T G A C T G T A C G
G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:4
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GAAGGYCACCTCYGGG
CAAGGHCANV------
 A C T G G C T A C T G A A T C G A C T G A G T C A G T C C G T A A G T C T A G C C A G T A T G C G A T C A C T G A C T G T A C G
T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:5
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GAAGGYCACCTCYGGG
BTCAAGGTCA--------
 A C G T A C G T A C T G G C T A C T G A A T C G A C T G A G T C A G T C C G T A A G T C T A G C C A G T A T G C G A T C A C T G A C T G T A C G
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:6
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GAAGGYCACCTCYGGG
TRAGGTCA--------
 A C T G G C T A C T G A A T C G A C T G A G T C A G T C C G T A A G T C T A G C C A G T A T G C G A T C A C T G A C T G T A C G
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:7
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----GAAGGYCACCTCYGGG
TCTCAAAGGTCACCTG----
 A C G T A C G T A C G T A C G T A C T G G C T A C T G A A T C G A C T G A G T C A G T C C G T A A G T C T A G C C A G T A T G C G A T C A C T G A C T G T A C G
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GAAGGYCACCTCYGGG
ATCAAGGTCA--------
 A C G T A C G T A C T G G C T A C T G A A T C G A C T G A G T C A G T C C G T A A G T C T A G C C A G T A T G C G A T C A C T G A C T G T A C G
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0014.1_Esrra_1/Jaspar

Match Rank:9
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GAAGGYCACCTCYGGG
TATTCAAGGTCATGCGA---
 A C G T A C G T A C G T A C G T A C T G G C T A C T G A A T C G A C T G A G T C A G T C C G T A A G T C T A G C C A G T A T G C G A T C A C T G A C T G T A C G
C A G T G T C A A C G T A G C T T A G C C T G A C T G A C A T G C A T G C A G T A G T C C T G A G C A T T C A G A G T C A C T G G T C A A C G T A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:10
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GAAGGYCACCTCYGGG
NTCAAGGTCA--------
 A C G T A C G T A C T G G C T A C T G A A T C G A C T G A G T C A G T C C G T A A G T C T A G C C A G T A T G C G A T C A C T G A C T G T A C G
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T