Information for 1-TGAACYCDWTGACCCC (Motif 1)

C G A T A T C G G T C A G T C A A G T C A G T C A G T C C T A G G C A T A C G T T A C G C G T A G T A C A G T C A G T C A G T C
Reverse Opposite:
C T A G C T A G A C T G A C T G A C G T A G T C C G T A C G T A G A T C C T A G C T A G A C T G A C G T A C G T A T G C C G T A
p-value:1e-88
log p-value:-2.040e+02
Information Content per bp:1.723
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif4.52%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets45.2 +/- 19.9bp
Average Position of motif in Background60.0 +/- 22.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:1
Score:0.96
Offset:-3
Orientation:reverse strand
Alignment:---TGAACYCDWTGACCCC-
NNNTGAACTCNNTGACCTCN
 A C G T A C G T A C G T C G A T A T C G G T C A G T C A A G T C A G T C A G T C C T A G G C A T A C G T T A C G C G T A G T A C A G T C A G T C A G T C A C G T
G T A C G A T C G T C A G C A T T C A G G T C A G T C A G T A C A G C T A G T C C G T A T A C G G C A T T A C G T G C A G T A C G A T C G A C T A G T C G A C T

RXRA::VDR/MA0074.1/Jaspar

Match Rank:2
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:TGAACYCDWTGACCCC
TGAACCCGATGACCC-
 C G A T A T C G G T C A G T C A A G T C A G T C A G T C C T A G G C A T A C G T T A C G C G T A G T A C A G T C A G T C A G T C
A G C T C T A G C G T A C G T A A G T C A G C T A G T C A C T G C G A T A G C T C T A G C G T A G T A C A G T C A G T C A C G T

Vdr/MA0693.1/Jaspar

Match Rank:3
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:TGAACYCDWTGACCCC
TGAACTCNATGAACTC
 C G A T A T C G G T C A G T C A A G T C A G T C A G T C C T A G G C A T A C G T T A C G C G T A G T A C A G T C A G T C A G T C
G A C T T C A G T G C A T G C A G A T C A G C T A G T C C T G A C T G A G A C T T C A G T G C A T G C A G T A C A G C T A G T C

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:4
Score:0.73
Offset:9
Orientation:reverse strand
Alignment:TGAACYCDWTGACCCC-
---------TGACCYCT
 C G A T A T C G G T C A G T C A A G T C A G T C A G T C C T A G G C A T A C G T T A C G C G T A G T A C A G T C A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T

NR2F1/MA0017.2/Jaspar

Match Rank:5
Score:0.71
Offset:5
Orientation:reverse strand
Alignment:TGAACYCDWTGACCCC--
-----CNNTTGACCTTTG
 C G A T A T C G G T C A G T C A A G T C A G T C A G T C C T A G G C A T A C G T T A C G C G T A G T A C A G T C A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.70
Offset:9
Orientation:reverse strand
Alignment:TGAACYCDWTGACCCC
---------TGACCT-
 C G A T A T C G G T C A G T C A A G T C A G T C A G T C C T A G G C A T A C G T T A C G C G T A G T A C A G T C A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T

PB0057.1_Rxra_1/Jaspar

Match Rank:7
Score:0.70
Offset:4
Orientation:forward strand
Alignment:TGAACYCDWTGACCCC-----
----TGTCGTGACCCCTTAAT
 C G A T A T C G G T C A G T C A A G T C A G T C A G T C C T A G G C A T A C G T T A C G C G T A G T A C A G T C A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T A T C G G A C T A G T C C A T G A G C T T C A G G T C A G T A C G T A C A G T C A G T C C G A T G A C T T C G A G T C A A G C T

PB0030.1_Hnf4a_1/Jaspar

Match Rank:8
Score:0.69
Offset:4
Orientation:reverse strand
Alignment:TGAACYCDWTGACCCC-----
----NNANTTGACCCCTNNNN
 C G A T A T C G G T C A G T C A A G T C A G T C A G T C C T A G G C A T A C G T T A C G C G T A G T A C A G T C A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G T A C C G T A T C G A A C G T A C G T C T A G G T C A G T A C G T A C A G T C A G T C C A G T A C T G T C A G G T C A T A C G

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:9
Score:0.68
Offset:9
Orientation:reverse strand
Alignment:TGAACYCDWTGACCCC-
---------TGACCTYA
 C G A T A T C G G T C A G T C A A G T C A G T C A G T C C T A G G C A T A C G T T A C G C G T A G T A C A G T C A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

PB0118.1_Esrra_2/Jaspar

Match Rank:10
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:TGAACYCDWTGACCCC-----
----NNNNTTGACCCCTNNNN
 C G A T A T C G G T C A G T C A A G T C A G T C A G T C C T A G G C A T A C G T T A C G C G T A G T A C A G T C A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G T A G C T A G C G A T C C G A T A G C T T C A G G C T A G T A C G A T C A G T C A G T C C G A T T G A C T A C G G T A C A T G C