Information for 6-GAVAGBTTHACTAGCA (Motif 9)

C T A G C G T A T A G C G T C A A T C G A G C T A C G T A C G T G A C T C G T A T G A C A C G T C G T A A T C G A G T C C G T A
Reverse Opposite:
C G A T A C T G A T G C A C G T C G T A A C T G A C G T C G T A C G T A C G T A T C G A T A G C A C G T A T C G C G A T A G T C
p-value:1e-13
log p-value:-3.016e+01
Information Content per bp:1.791
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.15%
Number of Background Sequences with motif9.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets49.1 +/- 28.0bp
Average Position of motif in Background32.2 +/- 33.6bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0168.1_Hnf1b/Jaspar

Match Rank:1
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GAVAGBTTHACTAGCA--
-AGCTGTTAACTAGCCGT
 C T A G C G T A T A G C G T C A A T C G A G C T A C G T A C G T G A C T C G T A T G A C A C G T C G T A A T C G A G T C C G T A A C G T A C G T
A C G T C G T A A C T G A G T C A C G T C T A G G C A T G A C T C G T A G C T A A G T C A G C T C G T A T C A G A G T C G A T C A T C G A G C T

PH0040.1_Hmbox1/Jaspar

Match Rank:2
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GAVAGBTTHACTAGCA---
--GANGTTAACTAGTTTNN
 C T A G C G T A T A G C G T C A A T C G A G C T A C G T A C G T G A C T C G T A T G A C A C G T C G T A A T C G A G T C C G T A A C G T A C G T A C G T
A C G T A C G T T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C

HMBOX1/MA0895.1/Jaspar

Match Rank:3
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:GAVAGBTTHACTAGCA
-----GTTAACTAGN-
 C T A G C G T A T A G C G T C A A T C G A G C T A C G T A C G T G A C T C G T A T G A C A C G T C G T A A T C G A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T A C G T

Hoxa11/MA0911.1/Jaspar

Match Rank:4
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GAVAGBTTHACTAGCA
---ANTTTTACGACC-
 C T A G C G T A T A G C G T C A A T C G A G C T A C G T A C G T G A C T C G T A T G A C A C G T C G T A A T C G A G T C C G T A
A C G T A C G T A C G T G C T A C G T A C G A T C G A T G C A T G C A T G C T A G A T C C T A G T C G A A G T C G A T C A C G T

HOXC13/MA0907.1/Jaspar

Match Rank:5
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:GAVAGBTTHACTAGCA
----NTTTTACGAGN-
 C T A G C G T A T A G C G T C A A T C G A G C T A C G T A C G T G A C T C G T A T G A C A C G T C G T A A T C G A G T C C G T A
A C G T A C G T A C G T A C G T C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C A C G T

PH0174.1_Vax1/Jaspar

Match Rank:6
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GAVAGBTTHACTAGCA---
---ACGTTAATTAACCCAG
 C T A G C G T A T A G C G T C A A T C G A G C T A C G T A C G T G A C T C G T A T G A C A C G T C G T A A T C G A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T T G C A T A G C T C A G C G A T G A C T G T C A G C T A C G A T C A G T C T G A T C G A A G T C G A T C G A T C C G T A C T A G

Hoxb5/MA0904.1/Jaspar

Match Rank:7
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GAVAGBTTHACTAGCA---
---ACGGTAATTAGCTCAT
 C T A G C G T A T A G C G T C A A T C G A G C T A C G T A C G T G A C T C G T A T G A C A C G T C G T A A T C G A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T T G C A G T A C C T A G A C T G G A C T G T C A G C T A C A G T A C G T C T G A T A C G G A T C G C A T G T A C C G T A G C A T

PH0060.1_Hoxb5/Jaspar

Match Rank:8
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GAVAGBTTHACTAGCA---
---ACGGTAATTAGCTCAT
 C T A G C G T A T A G C G T C A A T C G A G C T A C G T A C G T G A C T C G T A T G A C A C G T C G T A A T C G A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T T G C A G T A C C T A G A C T G G A C T G T C A G C T A C A G T A C G T C T G A T A C G G A T C G C A T G T A C C G T A G C A T

PH0052.1_Hoxa5/Jaspar

Match Rank:9
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GAVAGBTTHACTAGCA---
---ACGGTAATTAGCTCAG
 C T A G C G T A T A G C G T C A A T C G A G C T A C G T A C G T G A C T C G T A T G A C A C G T C G T A A T C G A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T T C G A T G A C C T A G A C T G G A C T G T C A G T C A A C G T A C G T C T G A T A C G G A T C G C A T G T A C C G T A C T A G

PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer

Match Rank:10
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GAVAGBTTHACTAGCA
---ASTTTCACTTCC-
 C T A G C G T A T A G C G T C A A T C G A G C T A C G T A C G T G A C T C G T A T G A C A C G T C G T A A T C G A G T C C G T A
A C G T A C G T A C G T C T G A A T G C G C A T G A C T G A C T A G T C G C T A A T G C G C A T C G A T A G T C G A T C A C G T