Information for 11-TGTAAGTGTC (Motif 12)

A C G T A C T G A C G T C G T A C G T A A C T G A C G T A C T G A C G T A G T C
Reverse Opposite:
A C T G C G T A A G T C C G T A A G T C A C G T A C G T C G T A A G T C C G T A
p-value:1e-7
log p-value:-1.686e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.51%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets34.8 +/- 21.6bp
Average Position of motif in Background46.4 +/- 18.7bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX3-2/MA0122.2/Jaspar

Match Rank:1
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:TGTAAGTGTC
-TTAAGTGGN
 A C G T A C T G A C G T C G T A C G T A A C T G A C G T A C T G A C G T A G T C
A C G T G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T

Nkx3-1/MA0124.2/Jaspar

Match Rank:2
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:TGTAAGTGTC
-TTAAGTGGT
 A C G T A C T G A C G T C G T A C G T A A C T G A C G T A C T G A C G T A G T C
A C G T G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T

ISL2/MA0914.1/Jaspar

Match Rank:3
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:TGTAAGTGTC
-TTAAGTGC-
 A C G T A C T G A C G T C G T A C G T A A C T G A C G T A C T G A C G T A G T C
A C G T G A C T C G A T C T G A G C T A C A T G C G A T C T A G A T G C A C G T

ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TGTAAGTGTC--
RGTTAGTGCCCY
 A C G T A C T G A C G T C G T A C G T A A C T G A C G T A C T G A C G T A G T C A C G T A C G T
C T G A C T A G A C G T G A C T G T C A A C T G A G C T A C T G A T G C G T A C G T A C A G C T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:5
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:TGTAAGTGTC-
-TTAAGTGCTT
 A C G T A C T G A C G T C G T A C G T A A C T G A C G T A C T G A C G T A G T C A C G T
A C G T A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T

NKX2-3/MA0672.1/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TGTAAGTGTC
NTCAAGTGGN
 A C G T A C T G A C G T C G T A C G T A A C T G A C G T A C T G A C G T A G T C
A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:7
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TGTAAGTGTC-
-TTRAGTGSYK
 A C G T A C T G A C G T C G T A C G T A A C T G A C G T A C T G A C G T A G T C A C G T
A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.62
Offset:3
Orientation:forward strand
Alignment:TGTAAGTGTC-
---AGGTGTCA
 A C G T A C T G A C G T C G T A C G T A A C T G A C G T A C T G A C G T A G T C A C G T
A C G T A C G T A C G T C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TGTAAGTGTC
CAGGTAAGTAT-
 A C G T A C G T A C G T A C T G A C G T C G T A C G T A A C T G A C G T A C T G A C G T A G T C
T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T A C G T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:10
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TGTAAGTGTC----
NTNNTTAAGTGGNTNAN
 A C G T A C G T A C G T A C G T A C T G A C G T C G T A C G T A A C T G A C G T A C T G A C G T A G T C A C G T A C G T A C G T A C G T
T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G