Information for 7-TGTCGGTGAC (Motif 5)

A C G T A C T G A G C T A G T C A C T G A C T G C A G T A C T G C G T A G A T C
Reverse Opposite:
C T A G C G A T A G T C G T C A G T A C G T A C A C T G T C G A G T A C G T C A
p-value:1e-11
log p-value:-2.581e+01
Information Content per bp:1.833
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.37%
Number of Background Sequences with motif39.9
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets43.1 +/- 25.0bp
Average Position of motif in Background57.4 +/- 27.7bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0139.1_Irf5_2/Jaspar

Match Rank:1
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----TGTCGGTGAC
NNAATTCTCGNTNAN
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G C T A G T C A C T G A C T G C A G T A C T G C G T A G A T C
A T C G T A C G C T G A C T G A G A C T G A C T T A G C A G C T A G T C C A T G C T A G G C A T G A T C C G T A T C G A

PB0195.1_Zbtb3_2/Jaspar

Match Rank:2
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TGTCGGTGAC--
NNNNTGCCAGTGATTG
 A C G T A C G T A C G T A C G T A C G T A C T G A G C T A G T C A C T G A C T G C A G T A C T G C G T A G A T C A C G T A C G T
G C T A G C A T C G A T G A T C G A C T T C A G T G A C T A G C C G T A A C T G A G C T C A T G C G T A A G C T C G A T T C A G

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:3
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TGTCGGTGAC--
TGACCTTGACCT
 A C G T A C T G A G C T A G T C A C T G A C T G C A G T A C T G C G T A G A T C A C G T A C G T
G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T

Pax2/MA0067.1/Jaspar

Match Rank:4
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:TGTCGGTGAC-
---NCGTGACN
 A C G T A C T G A G C T A G T C A C T G A C T G C A G T A C T G C G T A G A T C A C G T
A C G T A C G T A C G T T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TGTCGGTGAC--
TGTCTGDCACCT
 A C G T A C T G A G C T A G T C A C T G A C T G C A G T A C T G C G T A G A T C A C G T A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:6
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TGTCGGTGAC--
NAGGTCANTGACCT
 A C G T A C G T A C G T A C T G A G C T A G T C A C T G A C T G C A G T A C T G C G T A G A T C A C G T A C G T
T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T

Atf3/MA0605.1/Jaspar

Match Rank:7
Score:0.56
Offset:4
Orientation:forward strand
Alignment:TGTCGGTGAC--
----GATGACGT
 A C G T A C T G A G C T A G T C A C T G A C T G C A G T A C T G C G T A G A T C A C G T A C G T
A C G T A C G T A C G T A C G T A T C G C T G A A C G T A C T G C G T A A G T C C T A G G A C T

PB0140.1_Irf6_2/Jaspar

Match Rank:8
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----TGTCGGTGAC
ACCACTCTCGGTCAC
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G C T A G T C A C T G A C T G C A G T A C T G C G T A G A T C
T G C A A G T C A G T C G C T A G T A C C A G T A T G C A G C T A G T C C T A G T C A G C A G T G A T C C T G A T A G C

PB0179.1_Sp100_2/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--TGTCGGTGAC---
TCCGTCGCTTAAAAG
 A C G T A C G T A C G T A C T G A G C T A G T C A C T G A C T G C A G T A C T G C G T A G A T C A C G T A C G T A C G T
A G C T A T G C G A T C T C A G G C A T T G A C A C T G G A T C A C G T C A G T G C T A C G T A G C T A C G T A A C T G

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TGTCGGTGAC--
CTGTCTGTCACCT
 A C G T A C G T A C T G A G C T A G T C A C T G A C T G C A G T A C T G C G T A G A T C A C G T A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T