Information for 13-SWGGGTWWCCACT (Motif 19)

A T C G C G A T A C T G A C T G A C T G A C G T C G T A C G T A T A G C A G T C C G T A A T G C A C G T
Reverse Opposite:
C G T A A T C G A C G T A C T G A C T G C G A T C G A T C G T A A G T C A G T C A G T C C G T A T A G C
p-value:1e-8
log p-value:-1.860e+01
Information Content per bp:1.872
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.42%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets29.4 +/- 31.7bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:1
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:SWGGGTWWCCACT---
------MRSCACTYAA
 A T C G C G A T A C T G A C T G A C T G A C G T C G T A C G T A T A G C A G T C C G T A A T G C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

ZNF354C/MA0130.1/Jaspar

Match Rank:2
Score:0.61
Offset:6
Orientation:forward strand
Alignment:SWGGGTWWCCACT
------ATCCAC-
 A T C G C G A T A C T G A C T G A C T G A C G T C G T A C G T A T A G C A G T C C G T A A T G C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G C A G C A T A G T C A G T C C G T A A T G C A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:3
Score:0.59
Offset:7
Orientation:forward strand
Alignment:SWGGGTWWCCACT----
-------ACCACTTGAA
 A T C G C G A T A C T G A C T G A C T G A C G T C G T A C G T A T A G C A G T C C G T A A T G C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A

Spz1/MA0111.1/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:forward strand
Alignment:SWGGGTWWCCACT
-AGGGTAACAGC-
 A T C G C G A T A C T G A C T G A C T G A C G T C G T A C G T A T A G C A G T C C G T A A T G C A C G T
A C G T C T G A A T C G C T A G A C T G C A G T C G T A C G T A T A G C C T G A A C T G T A G C A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:5
Score:0.57
Offset:7
Orientation:forward strand
Alignment:SWGGGTWWCCACT---
-------ACCACTTAA
 A T C G C G A T A C T G A C T G A C T G A C G T C G T A C G T A T A G C A G T C C G T A A T G C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:6
Score:0.57
Offset:6
Orientation:forward strand
Alignment:SWGGGTWWCCACT---
------AASCACTCAA
 A T C G C G A T A C T G A C T G A C T G A C G T C G T A C G T A T A G C A G T C C G T A A T G C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

NFKB1/MA0105.4/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:SWGGGTWWCCACT
AGGGGATTCCCCT
 A T C G C G A T A C T G A C T G A C T G A C G T C G T A C G T A T A G C A G T C C G T A A T G C A C G T
T G C A C T A G C A T G C A T G C T A G T C G A G C A T A G C T G A T C G T A C T A G C G A T C A C G T

PH0004.1_Nkx3-2/Jaspar

Match Rank:8
Score:0.57
Offset:3
Orientation:forward strand
Alignment:SWGGGTWWCCACT-------
---CATAACCACTTAACAAC
 A T C G C G A T A C T G A C T G A C T G A C G T C G T A C G T A T A G C A G T C C G T A A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C

PB0159.1_Rfx4_2/Jaspar

Match Rank:9
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:SWGGGTWWCCACT---
-NNNGTAACTANGNNA
 A T C G C G A T A C T G A C T G A C T G A C G T C G T A C G T A T A G C A G T C C G T A A T G C A C G T A C G T A C G T A C G T
A C G T A C G T A T G C A T C G A C T G G A C T G T C A C G T A G T A C A G C T G C T A C A T G A T C G T A C G C A G T C G T A

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-SWGGGTWWCCACT---
NTNNCGTATCCAAGTNN
 A C G T A T C G C G A T A C T G A C T G A C T G A C G T C G T A C G T A T A G C A G T C C G T A A T G C A C G T A C G T A C G T A C G T
C G T A C G A T G C A T A T G C A T G C C T A G G A C T G T C A C G A T A G T C A G T C C T G A G T C A T A C G A G C T T G C A T A C G