Information for 1-VGCCGCCATBTTG (Motif 1)

T G A C C A T G T A G C T A G C T C A G A G T C A G T C G C T A A C G T A G C T C G A T A G C T C A T G
Reverse Opposite:
G T A C T C G A C G T A T C G A C G T A C G A T A C T G A C T G A G T C A T C G A T C G G T A C A C T G
p-value:1e-368
log p-value:-8.486e+02
Information Content per bp:1.643
Number of Target Sequences with motif347.0
Percentage of Target Sequences with motif36.49%
Number of Background Sequences with motif665.9
Percentage of Background Sequences with motif1.49%
Average Position of motif in Targets50.9 +/- 24.4bp
Average Position of motif in Background53.8 +/- 38.3bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.96
Offset:1
Orientation:reverse strand
Alignment:VGCCGCCATBTTG
-GCNGCCATCTTG
 T G A C C A T G T A G C T A G C T C A G A G T C A G T C G C T A A C G T A G C T C G A T A G C T C A T G
A C G T C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G

YY1(Zf)/Promoter/Homer

Match Rank:2
Score:0.94
Offset:1
Orientation:reverse strand
Alignment:VGCCGCCATBTTG
-GCCGCCATCTTG
 T G A C C A T G T A G C T A G C T C A G A G T C A G T C G C T A A C G T A G C T C G A T A G C T C A T G
A C G T C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G

YY2/MA0748.1/Jaspar

Match Rank:3
Score:0.83
Offset:0
Orientation:forward strand
Alignment:VGCCGCCATBTTG
GTCCGCCATTA--
 T G A C C A T G T A G C T A G C T C A G A G T C A G T C G C T A A C G T A G C T C G A T A G C T C A T G
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.63
Offset:3
Orientation:forward strand
Alignment:VGCCGCCATBTTG
---GGCCATTAAC
 T G A C C A T G T A G C T A G C T C A G A G T C A G T C G C T A A C G T A G C T C G A T A G C T C A T G
A C G T A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.63
Offset:4
Orientation:forward strand
Alignment:VGCCGCCATBTTG-
----GCCATCTGTT
 T G A C C A T G T A G C T A G C T C A G A G T C A G T C G C T A A C G T A G C T C G A T A G C T C A T G A C G T
A C G T A C G T A C G T A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:6
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:VGCCGCCATBTTG----
CCNNACCATCTGGCCTN
 T G A C C A T G T A G C T A G C T C A G A G T C A G T C G C T A A C G T A G C T C G A T A G C T C A T G A C G T A C G T A C G T A C G T
A G T C T A G C T A C G C T A G T C G A G T A C A G T C C G T A A G C T T G A C A G C T C A T G A T C G G T A C G A T C A G C T C A G T

E2F2/MA0864.1/Jaspar

Match Rank:7
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----VGCCGCCATBTTG
AAAATGGCGCCATTTT-
 A C G T A C G T A C G T A C G T T G A C C A T G T A G C T A G C T C A G A G T C A G T C G C T A A C G T A G C T C G A T A G C T C A T G
C G T A C G T A C G T A C G T A C G A T A T C G A C T G A G T C A C T G A G T C A T G C G C T A G C A T C G A T C G A T G C A T A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:8
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----VGCCGCCATBTTG
TACGCCCCGCCACTCTG
 A C G T A C G T A C G T A C G T T G A C C A T G T A G C T A G C T C A G A G T C A G T C G C T A A C G T A G C T C G A T A G C T C A T G
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:VGCCGCCATBTTG
---TGCCAA----
 T G A C C A T G T A G C T A G C T C A G A G T C A G T C G C T A A C G T A G C T C G A T A G C T C A T G
A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T

Neurog1/MA0623.1/Jaspar

Match Rank:10
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:VGCCGCCATBTTG-
----ACCATATGGT
 T G A C C A T G T A G C T A G C T C A G A G T C A G T C G C T A A C G T A G C T C G A T A G C T C A T G A C G T
A C G T A C G T A C G T A C G T T C G A T G A C G T A C C T G A A C G T T G C A G A C T A C T G A T C G G A C T