Information for 2-AGTCTGCCGG (Motif 3)

C G T A A C T G A C G T A G T C A C G T A C T G A G T C A G T C T A C G A C T G
Reverse Opposite:
G T A C A G T C A C T G A C T G A G T C C G T A A C T G C G T A G T A C A C G T
p-value:1e-12
log p-value:-2.852e+01
Information Content per bp:1.883
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif7.29%
Number of Background Sequences with motif30.6
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets56.0 +/- 24.1bp
Average Position of motif in Background49.4 +/- 27.4bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-AGTCTGCCGG
TWGTCTGV---
 A C G T C G T A A C T G A C G T A G T C A C G T A C T G A G T C A G T C T A C G A C T G
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---AGTCTGCCGG
VBSYGTCTGG---
 A C G T A C G T A C G T C G T A A C T G A C G T A G T C A C G T A C T G A G T C A G T C T A C G A C T G
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-AGTCTGCCGG
CTGTCTGG---
 A C G T C G T A A C T G A C G T A G T C A C G T A C T G A G T C A G T C T A C G A C T G
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:4
Score:0.64
Offset:3
Orientation:forward strand
Alignment:AGTCTGCCGG--
---CTGCCCGCA
 C G T A A C T G A C G T A G T C A C G T A C T G A G T C A G T C T A C G A C T G A C G T A C G T
A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AGTCTGCCGG--
TGTCTGDCACCT
 C G T A A C T G A C G T A G T C A C G T A C T G A G T C A G T C T A C G A C T G A C G T A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGTCTGCCGG
GGTCTGGCAT
 C G T A A C T G A C G T A G T C A C G T A C T G A G T C A G T C T A C G A C T G
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AGTCTGCCGG--
CTGTCTGTCACCT
 A C G T C G T A A C T G A C G T A G T C A C G T A C T G A G T C A G T C T A C G A C T G A C G T A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:8
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AGTCTGCCGG
TGAGTCAGCA--
 A C G T A C G T C G T A A C T G A C G T A G T C A C G T A C T G A G T C A G T C T A C G A C T G
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----AGTCTGCCGG
TGGCAGNCTGCCAG
 A C G T A C G T A C G T A C G T C G T A A C T G A C G T A G T C A C G T A C T G A G T C A G T C T A C G A C T G
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

MF0001.1_ETS_class/Jaspar

Match Rank:10
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:AGTCTGCCGG-
---CTTCCGGT
 C G T A A C T G A C G T A G T C A C G T A C T G A G T C A G T C T A C G A C T G A C G T
A C G T A C G T A C G T A G T C C G A T G A C T G A T C G T A C A C T G A T C G G A C T