Information for 8-RGGCAGTGGCAAATGC (Motif 7)

C T A G A C T G C T A G G T A C C T G A A C T G A C G T A T C G A C T G A G T C C G T A C G T A T C G A A C G T A C T G A G T C
Reverse Opposite:
C T A G A G T C G T C A A C G T C G A T C G A T A C T G T A G C A T G C T C G A A G T C A G C T C A T G A G T C A G T C G A T C
p-value:1e-12
log p-value:-2.983e+01
Information Content per bp:1.733
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.09%
Number of Background Sequences with motif6.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets61.0 +/- 29.4bp
Average Position of motif in Background59.4 +/- 18.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:1
Score:0.54
Offset:5
Orientation:forward strand
Alignment:RGGCAGTGGCAAATGC-
-----NNVVCAGCTGBN
 C T A G A C T G C T A G G T A C C T G A A C T G A C G T A T C G A C T G A G T C C G T A C G T A T C G A A C G T A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T

HES7/MA0822.1/Jaspar

Match Rank:2
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:RGGCAGTGGCAAATGC--
------TGGCACGTGCCA
 C T A G A C T G C T A G G T A C C T G A A C T G A C G T A T C G A C T G A G T C C G T A C G T A T C G A A C G T A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T T A C G C T A G A G T C C G T A A G T C A C T G A G C T C T A G A G T C A G T C C T G A

Bhlha15/MA0607.1/Jaspar

Match Rank:3
Score:0.54
Offset:8
Orientation:forward strand
Alignment:RGGCAGTGGCAAATGC
--------CCATATGT
 C T A G A C T G C T A G G T A C C T G A A C T G A C G T A T C G A C T G A G T C C G T A C G T A T C G A A C G T A C T G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C G T G T C A A C G T A C T G A G C T

PB0003.1_Ascl2_1/Jaspar

Match Rank:4
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:RGGCAGTGGCAAATGC----
---NNNNAGCAGCTGCTGAN
 C T A G A C T G C T A G G T A C C T G A A C T G A C G T A T C G A C T G A G T C C G T A C G T A T C G A A C G T A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:5
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-RGGCAGTGGCAAATGC
ADGGYAGYAGCATCT--
 A C G T C T A G A C T G C T A G G T A C C T G A A C T G A C G T A T C G A C T G A G T C C G T A C G T A T C G A A C G T A C T G A G T C
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T A C G T A C G T

HES5/MA0821.1/Jaspar

Match Rank:6
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:RGGCAGTGGCAAATGC--
------TGGCACGTGCCG
 C T A G A C T G C T A G G T A C C T G A A C T G A C G T A T C G A C T G A G T C C G T A C G T A T C G A A C G T A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T T C A G T C A G A G T C C T G A A G T C C A T G A G C T A C T G A G T C A G T C C T A G

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:7
Score:0.52
Offset:5
Orientation:forward strand
Alignment:RGGCAGTGGCAAATGC-
-----VNAVCAGCTGGC
 C T A G A C T G C T A G G T A C C T G A A C T G A C G T A T C G A C T G A G T C C G T A C G T A T C G A A C G T A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T T C A G A C G T T C G A T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G T C

NEUROG2/MA0669.1/Jaspar

Match Rank:8
Score:0.51
Offset:7
Orientation:reverse strand
Alignment:RGGCAGTGGCAAATGC-
-------GACATATGTT
 C T A G A C T G C T A G G T A C C T G A A C T G A C G T A T C G A C T G A G T C C G T A C G T A T C G A A C G T A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C G A A G T C C G T A A C G T T G C A A G C T C T A G A C G T A G C T

KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer

Match Rank:9
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-RGGCAGTGGCAAATGC
MKGGGYGTGGCC-----
 A C G T C T A G A C T G C T A G G T A C C T G A A C T G A C G T A T C G A C T G A G T C C G T A C G T A T C G A A C G T A C T G A G T C
G T A C C A G T A C T G A C T G A C T G G A T C A C T G A C G T A C T G A C T G A G T C G A T C A C G T A C G T A C G T A C G T A C G T

Myod1/MA0499.1/Jaspar

Match Rank:10
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:RGGCAGTGGCAAATGC-
----NGNGACAGCTGCN
 C T A G A C T G C T A G G T A C C T G A A C T G A C G T A T C G A C T G A G T C C G T A C G T A T C G A A C G T A C T G A G T C A C G T
A C G T A C G T A C G T A C G T T C G A T C A G A T C G T C A G T C G A A G T C C G T A A C T G T A G C C G A T A C T G A T G C C G T A