Information for 4-YGGCCAATCRVAK (Motif 3)

A G C T T C A G T C A G A G T C T A G C G C T A C T G A G A C T T A G C T C A G T A C G T C G A C A T G
Reverse Opposite:
G T A C A G C T A T G C A G T C A T C G C G T A A G C T C A G T A C T G A C T G A G T C A G T C T C G A
p-value:1e-57
log p-value:-1.332e+02
Information Content per bp:1.596
Number of Target Sequences with motif93.0
Percentage of Target Sequences with motif12.69%
Number of Background Sequences with motif647.7
Percentage of Background Sequences with motif1.35%
Average Position of motif in Targets53.1 +/- 24.1bp
Average Position of motif in Background50.6 +/- 32.6bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.94
Offset:1
Orientation:forward strand
Alignment:YGGCCAATCRVAK
-AGCCAATCGG--
 A G C T T C A G T C A G A G T C T A G C G C T A C T G A G A C T T A G C T C A G T A C G T C G A C A T G
A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.92
Offset:-2
Orientation:forward strand
Alignment:--YGGCCAATCRVAK
ACTAGCCAATCA---
 A C G T A C G T A G C T T C A G T C A G A G T C T A G C G C T A C T G A G A C T T A G C T C A G T A C G T C G A C A T G
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:3
Score:0.89
Offset:-4
Orientation:forward strand
Alignment:----YGGCCAATCRVAK
AAATGGACCAATCAG--
 A C G T A C G T A C G T A C G T A G C T T C A G T C A G A G T C T A G C G C T A C T G A G A C T T A G C T C A G T A C G T C G A C A T G
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T A C G T

NFYA/MA0060.2/Jaspar

Match Rank:4
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-YGGCCAATCRVAK----
TGGACCAATCAGCACTCT
 A C G T A G C T T C A G T C A G A G T C T A G C G C T A C T G A G A C T T A G C T C A G T A C G T C G A C A T G A C G T A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:YGGCCAATCRVAK
-TGCCAA------
 A G C T T C A G T C A G A G T C T A G C G C T A C T G A G A C T T A G C T C A G T A C G T C G A C A T G
A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-YGGCCAATCRVAK
CGTGCCAAG-----
 A C G T A G C T T C A G T C A G A G T C T A G C G C T A C T G A G A C T T A G C T C A G T A C G T C G A C A T G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T

Dux/MA0611.1/Jaspar

Match Rank:7
Score:0.72
Offset:3
Orientation:forward strand
Alignment:YGGCCAATCRVAK
---CCAATCAA--
 A G C T T C A G T C A G A G T C T A G C G C T A C T G A G A C T T A G C T C A G T A C G T C G A C A T G
A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T

Gfi1/MA0038.1/Jaspar

Match Rank:8
Score:0.67
Offset:3
Orientation:forward strand
Alignment:YGGCCAATCRVAK
---CAAATCACTG
 A G C T T C A G T C A G A G T C T A G C G C T A C T G A G A C T T A G C T C A G T A C G T C G A C A T G
A C G T A C G T A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G

PH0026.1_Duxbl/Jaspar

Match Rank:9
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-YGGCCAATCRVAK---
CGACCCAATCAACGGTG
 A C G T A G C T T C A G T C A G A G T C T A G C G C T A C T G A G A C T T A G C T C A G T A C G T C G A C A T G A C G T A C G T A C G T
A G T C C T A G C T G A A G T C A G T C A G T C G T C A G T C A A G C T A G T C C G T A C T G A A G T C T A C G T C A G G C A T T A C G

NFIA/MA0670.1/Jaspar

Match Rank:10
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-YGGCCAATCRVAK
GGTGCCAAGT----
 A C G T A G C T T C A G T C A G A G T C T A G C G C T A C T G A G A C T T A G C T C A G T A C G T C G A C A T G
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T A C G T