Information for 11-CTCTCATGCTGTGAAT (Motif 12)

T A G C G A C T A T G C C G A T A G T C C G T A A C G T C T A G A T G C A C G T A C T G C G A T A C T G T C G A C G T A A C G T
Reverse Opposite:
G T C A C G A T A C G T T A G C C G T A A G T C C G T A A T C G A G T C G T C A C G A T C T A G C G T A T A C G C G T A A C T G
p-value:1e-11
log p-value:-2.661e+01
Information Content per bp:1.724
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.95%
Number of Background Sequences with motif5.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets61.6 +/- 25.5bp
Average Position of motif in Background53.7 +/- 19.3bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0207.1_Zic3_2/Jaspar

Match Rank:1
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:CTCTCATGCTGTGAAT
-NNTCCTGCTGTGNNN
 T A G C G A C T A T G C C G A T A G T C C G T A A C G T C T A G A T G C A C G T A C T G C G A T A C T G T C G A C G T A A C G T
A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

PB0206.1_Zic2_2/Jaspar

Match Rank:2
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:CTCTCATGCTGTGAAT
-TCNCCTGCTGNGNNN
 T A G C G A C T A T G C C G A T A G T C C G T A A C G T C T A G A T G C A C G T A C T G C G A T A C T G T C G A C G T A A C G T
A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:CTCTCATGCTGTGAAT
-TNTCCTGCTGTGNNG
 T A G C G A C T A T G C C G A T A G T C C G T A A C G T C T A G A T G C A C G T A C T G C G A T A C T G T C G A C G T A A C G T
A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:4
Score:0.68
Offset:4
Orientation:forward strand
Alignment:CTCTCATGCTGTGAAT
----CCTGCTGAGH--
 T A G C G A C T A T G C C G A T A G T C C G T A A C G T C T A G A T G C A C G T A C T G C G A T A C T G T C G A C G T A A C G T
A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:5
Score:0.66
Offset:5
Orientation:forward strand
Alignment:CTCTCATGCTGTGAAT
-----AAGGTGTKAA-
 T A G C G A C T A T G C C G A T A G T C C G T A A C G T C T A G A T G C A C G T A C T G C G A T A C T G T C G A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A A C G T

Gfi1b/MA0483.1/Jaspar

Match Rank:6
Score:0.63
Offset:6
Orientation:reverse strand
Alignment:CTCTCATGCTGTGAAT-
------TGCTGTGATTT
 T A G C G A C T A T G C C G A T A G T C C G T A A C G T C T A G A T G C A C G T A C T G C G A T A C T G T C G A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T C T A G G A T C G C A T A T C G C G A T A C T G T C G A A G C T A C G T A C G T

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:7
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:CTCTCATGCTGTGAAT
------AGGTGTTAAT
 T A G C G A C T A T G C C G A T A G T C C G T A A C G T C T A G A T G C A C G T A C T G C G A T A C T G T C G A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T

MEIS2/MA0774.1/Jaspar

Match Rank:8
Score:0.62
Offset:7
Orientation:reverse strand
Alignment:CTCTCATGCTGTGAAT
-------GCTGTCAA-
 T A G C G A C T A T G C C G A T A G T C C G T A A C G T C T A G A T G C A C G T A C T G C G A T A C T G T C G A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CTCTCATGCTGTGAAT
-CCCCCTGCTGTG---
 T A G C G A C T A T G C C G A T A G T C C G T A A C G T C T A G A T G C A C G T A C T G C G A T A C T G T C G A C G T A A C G T
A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:10
Score:0.60
Offset:7
Orientation:reverse strand
Alignment:CTCTCATGCTGTGAAT-
-------GCAGTGATTT
 T A G C G A C T A T G C C G A T A G T C C G T A A C G T C T A G A T G C A C G T A C T G C G A T A C T G T C G A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G A G T C G C T A A T C G C G A T A C T G T C G A A C G T A C G T A C G T