Information for 5-AMCAGAGAMSAYSRCC (Motif 6)

C G T A T G C A A G T C C G T A C T A G C G T A A C T G C T G A G T A C A T G C G T C A A G T C A T C G C T A G A G T C A G T C
Reverse Opposite:
A C T G A C T G A G T C A T G C C T A G A C G T A T C G A C T G A G C T A G T C A C G T A G T C A C G T A C T G A C G T A C G T
p-value:1e-13
log p-value:-3.139e+01
Information Content per bp:1.833
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.7 +/- 27.9bp
Average Position of motif in Background61.8 +/- 4.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0071.1_Sox4_1/Jaspar

Match Rank:1
Score:0.52
Offset:-5
Orientation:forward strand
Alignment:-----AMCAGAGAMSAYSRCC
AGAAGAACAAAGGACTA----
 A C G T A C G T A C G T A C G T A C G T C G T A T G C A A G T C C G T A C T A G C G T A A C T G C T G A G T A C A T G C G T C A A G T C A T C G C T A G A G T C A G T C
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A A C G T A C G T A C G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:2
Score:0.51
Offset:-5
Orientation:forward strand
Alignment:-----AMCAGAGAMSAYSRCC
ATAAGAACAAAGGACTA----
 A C G T A C G T A C G T A C G T A C G T C G T A T G C A A G T C C G T A C T A G C G T A A C T G C T G A G T A C A T G C G T C A A G T C A T C G C T A G A G T C A G T C
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A A C G T A C G T A C G T A C G T

PB0138.1_Irf4_2/Jaspar

Match Rank:3
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--AMCAGAGAMSAYSRCC
GNNACCGAGAATNNN---
 A C G T A C G T C G T A T G C A A G T C C G T A C T A G C G T A A C T G C T G A G T A C A T G C G T C A A G T C A T C G C T A G A G T C A G T C
A T C G G T A C C T G A G C T A A G T C A G T C C A T G T C G A C A T G G C T A C T G A C G A T T C G A A T G C A G C T A C G T A C G T A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:4
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--AMCAGAGAMSAYSRCC
AAACCACAGAN-------
 A C G T A C G T C G T A T G C A A G T C C G T A C T A G C G T A A C T G C T G A G T A C A T G C G T C A A G T C A T C G C T A G A G T C A G T C
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:AMCAGAGAMSAYSRCC
-TCAGNGAGCGTGAC-
 C G T A T G C A A G T C C G T A C T A G C G T A A C T G C T G A G T A C A T G C G T C A A G T C A T C G C T A G A G T C A G T C
A C G T A C G T T A G C T C G A A T C G T A C G T C A G C T G A A T C G A G T C C T A G G A C T C T A G C T G A T G A C A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.50
Offset:-4
Orientation:forward strand
Alignment:----AMCAGAGAMSAYSRCC
CAAATCCAGACATCACA---
 A C G T A C G T A C G T A C G T C G T A T G C A A G T C C G T A C T A G C G T A A C T G C T G A G T A C A T G C G T C A A G T C A T C G C T A G A G T C A G T C
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T A C G T A C G T

Klf12/MA0742.1/Jaspar

Match Rank:7
Score:0.50
Offset:6
Orientation:forward strand
Alignment:AMCAGAGAMSAYSRCC-----
------GACCACGCCCTTATT
 C G T A T G C A A G T C C G T A C T A G C G T A A C T G C T G A G T A C A T G C G T C A A G T C A T C G C T A G A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A T G T C G A G T A C T A G C T G C A G T A C C T A G A G T C A G T C A G T C G C A T G C A T G C T A G C A T G C A T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:8
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--AMCAGAGAMSAYSRCC
GGAACAAAGR--------
 A C G T A C G T C G T A T G C A A G T C C G T A C T A G C G T A A C T G C T G A G T A C A T G C G T C A A G T C A T C G C T A G A G T C A G T C
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--AMCAGAGAMSAYSRCC
AAACCACAGC--------
 A C G T A C G T C G T A T G C A A G T C C G T A C T A G C G T A A C T G C T G A G T A C A T G C G T C A A G T C A T C G C T A G A G T C A G T C
G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:AMCAGAGAMSAYSRCC
-CCAGACRSVB-----
 C G T A T G C A A G T C C G T A C T A G C G T A A C T G C T G A G T A C A T G C G T C A A G T C A T C G C T A G A G T C A G T C
A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T A C G T A C G T