Information for 8-CACAATAATACGT (Motif 4)

A G T C C G T A A G T C C G T A C G T A A C G T C G T A C G T A A G C T C G T A A G T C C T A G A C G T
Reverse Opposite:
C G T A G A T C T A C G A C G T C T G A A C G T A C G T C G T A C G A T C G A T A C T G A C G T C T A G
p-value:1e-13
log p-value:-3.139e+01
Information Content per bp:1.842
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets45.2 +/- 22.7bp
Average Position of motif in Background50.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0122.1_Foxk1_2/Jaspar

Match Rank:1
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--CACAATAATACGT
CAAACAACAACACCT
 A C G T A C G T A G T C C G T A A G T C C G T A C G T A A C G T C G T A C G T A A G C T C G T A A G T C C T A G A C G T
G T A C G C T A G T C A C T G A G A T C T G C A T C G A A G T C T C G A C G T A G A T C C G T A G A T C G T A C G A C T

PB0172.1_Sox1_2/Jaspar

Match Rank:2
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----CACAATAATACGT
NNNTAACAATTATAN--
 A C G T A C G T A C G T A C G T A G T C C G T A A G T C C G T A C G T A A C G T C G T A C G T A A G C T C G T A A G T C C T A G A C G T
A T G C T C A G G T A C A C G T T G C A T G C A A T G C C T G A C T G A G A C T C G A T C T G A G A C T C T G A C A T G A C G T A C G T

Sox17/MA0078.1/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CACAATAATACGT
GACAATGNN----
 A G T C C G T A A G T C C G T A C G T A A C G T C G T A C G T A A G C T C G T A A G T C C T A G A C G T
T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G A C G T A C G T A C G T A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CACAATAATACGT--
AATGCAATAAAATTTAT
 A C G T A C G T A G T C C G T A A G T C C G T A C G T A A C G T C G T A C G T A A G C T C G T A A G T C C T A G A C G T A C G T A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

PB0120.1_Foxj1_2/Jaspar

Match Rank:5
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----CACAATAATACGT
ATGTCACAACAACAC--
 A C G T A C G T A C G T A C G T A G T C C G T A A G T C C G T A C G T A A C G T C G T A C G T A A G C T C G T A A G T C C T A G A C G T
C G T A A G C T T C A G A C G T T A G C T C G A A G T C C T G A G T C A T G A C C G T A C T G A A T G C T C G A G T A C A C G T A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:6
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CACAATAATACGT
-CCAATAAAAC--
 A G T C C G T A A G T C C G T A C G T A A C G T C G T A C G T A A G C T C G T A A G T C C T A G A C G T
A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C A C G T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:7
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CACAATAATACGT
-CCAATAAAAA--
 A G T C C G T A A G T C C G T A C G T A A C G T C G T A C G T A A G C T C G T A A G T C C T A G A C G T
A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T A C G T

PB0073.1_Sox7_1/Jaspar

Match Rank:8
Score:0.60
Offset:-7
Orientation:forward strand
Alignment:-------CACAATAATACGT--
AATAAAGAACAATAGAATTTCA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C C G T A C G T A A C G T C G T A C G T A A G C T C G T A A G T C C T A G A C G T A C G T A C G T
G T C A G C T A A C G T C T G A G C T A C G T A C T A G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C T A G A C T G C A T G C A T A G T C G C T A

CDX1/MA0878.1/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CACAATAATACGT
-GCAATAAAA---
 A G T C C G T A A G T C C G T A C G T A A C G T C G T A C G T A A G C T C G T A A G T C C T A G A C G T
A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:10
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CACAATAATACGT
CTCACACAATGGCGC--
 A C G T A C G T A C G T A C G T A G T C C G T A A G T C C G T A C G T A A C G T C G T A C G T A A G C T C G T A A G T C C T A G A C G T
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C A C G T A C G T