Information for 12-CTCGGCAGAA (Motif 30)

A G T C A C G T A G T C A C T G A C T G A G T C C G T A A C T G C G T A G T C A
Reverse Opposite:
A C G T A C G T A G T C A C G T A C T G A G T C A G T C A C T G C G T A A C T G
p-value:1e-6
log p-value:-1.421e+01
Information Content per bp:1.957
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif5.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets64.5 +/- 20.0bp
Average Position of motif in Background56.7 +/- 25.7bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GFX(?)/Promoter/Homer

Match Rank:1
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CTCGGCAGAA-
TCTCGCGAGAAT
 A C G T A G T C A C G T A G T C A C T G A C T G A G T C C G T A A C T G C G T A G T C A A C G T
G A C T T G A C A C G T T A G C C A T G A G T C C A T G T C G A A C T G T C G A C T G A A G C T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CTCGGCAGAA
WDNCTGGGCA---
 A C G T A C G T A C G T A G T C A C G T A G T C A C T G A C T G A G T C C G T A A C T G C G T A G T C A
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T A C G T

ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----CTCGGCAGAA-
GGNTCTCGCGAGAAC
 A C G T A C G T A C G T A C G T A G T C A C G T A G T C A C T G A C T G A G T C C G T A A C T G C G T A G T C A A C G T
T A C G T C A G T G C A A G C T T G A C A G C T A G T C A C T G G A T C A C T G T C G A A C T G C T G A C T G A A T G C

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CTCGGCAGAA
NNTTGGCANN-
 A C G T A G T C A C G T A G T C A C T G A C T G A G T C C G T A A C T G C G T A G T C A
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CTCGGCAGAA
CTTGGCAA--
 A G T C A C G T A G T C A C T G A C T G A G T C C G T A A C T G C G T A G T C A
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T

ZBTB33/MA0527.1/Jaspar

Match Rank:6
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----CTCGGCAGAA
NAGNTCTCGCGAGAN
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T A G T C A C T G A C T G A G T C C G T A A C T G C G T A G T C A
T A G C T C G A T C A G T C G A A G C T T G A C A G C T A G T C C T A G G A T C A C T G C T G A A C T G T C G A T C A G

MAFK/MA0496.1/Jaspar

Match Rank:7
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CTCGGCAGAA-
CTGAGTCAGCAATTT
 A C G T A C G T A C G T A C G T A G T C A C G T A G T C A C T G A C T G A G T C C G T A A C T G C G T A G T C A A C G T
G T A C G C A T C T A G C G T A T A C G A G C T G T A C C G T A A C T G A T G C G C T A C G T A G C A T G C A T G C A T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CTCGGCAGAA----
----CCAGACRSVB
 A G T C A C G T A G T C A C T G A C T G A G T C C G T A A C T G C G T A G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

NRL/MA0842.1/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CTCGGCAGAA-
GTCAGCANNTN
 A G T C A C G T A G T C A C T G A C T G A G T C C G T A A C T G C G T A G T C A A C G T
T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CTCGGCAGAA--
CACAGCAGGGGG
 A G T C A C G T A G T C A C T G A C T G A G T C C G T A A C T G C G T A G T C A A C G T A C G T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G