Information for 20-CACTGCAGSTCAAAAG (Motif 25)

A G T C C T G A A G T C C A G T A C T G A G T C C G T A C A T G A T G C A C G T T G A C C G T A C G T A G T C A C T G A C T A G
Reverse Opposite:
A G T C A G C T A C G T A C G T A C G T A C T G G T C A A T C G G A T C A C G T A C T G G T A C G T C A C T A G G A C T T A C G
p-value:1e-8
log p-value:-1.972e+01
Information Content per bp:1.760
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets25.2 +/- 8.7bp
Average Position of motif in Background21.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rarg/MA0859.1/Jaspar

Match Rank:1
Score:0.60
Offset:5
Orientation:forward strand
Alignment:CACTGCAGSTCAAAAG-----
-----AAGGTCAAAAGGTCAA
 A G T C C T G A A G T C C A G T A C T G A G T C C G T A C A T G A T G C A C G T T G A C C G T A C G T A G T C A C T G A C T A G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A T C G A C T A G A C T G A C G T A G T C T C G A C G T A C T G A T C G A A C T G A C T G A C G T A G T C T C G A G C T A

Rarb/MA0857.1/Jaspar

Match Rank:2
Score:0.57
Offset:4
Orientation:forward strand
Alignment:CACTGCAGSTCAAAAG----
----AAAGGTCAAAAGGTCA
 A G T C C T G A A G T C C A G T A C T G A G T C C G T A C A T G A T G C A C G T T G A C C G T A C G T A G T C A C T G A C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C T A C T G A T C G A A C T G A C T G C A G T A T G C C T G A G C T A C T G A C T G A C T A G A C T G A G C T A G T C C T G A

RARA/MA0729.1/Jaspar

Match Rank:3
Score:0.57
Offset:5
Orientation:forward strand
Alignment:CACTGCAGSTCAAAAG-------
-----GAGGTCAAAAGGTCAATG
 A G T C C T G A A G T C C A G T A C T G A G T C C G T A C A T G A T G C A C G T T G A C C G T A C G T A G T C A C T G A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G T C G A A C T G C A T G A G C T T A G C C T G A C G T A C G T A T G C A A C T G A C T G C G A T A G T C C T G A G C T A C A G T A C T G

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:4
Score:0.57
Offset:5
Orientation:forward strand
Alignment:CACTGCAGSTCAAAAG----
-----GAGGTCAAAAGGTCA
 A G T C C T G A A G T C C A G T A C T G A G T C C G T A C A T G A T G C A C G T T G A C C G T A C G T A G T C A C T G A C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G C T G A A C T G C T A G A C G T A G T C G T C A C G T A C T G A C G T A A C T G A C T G C G A T A G T C C T G A

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CACTGCAGSTCAAAAG
ATTTGCATAACAAAG-
 A G T C C T G A A G T C C A G T A C T G A G T C C G T A C A T G A T G C A C G T T G A C C G T A C G T A G T C A C T G A C T A G
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G A C G T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.54
Offset:6
Orientation:forward strand
Alignment:CACTGCAGSTCAAAAG
------ACATCAAAGG
 A G T C C T G A A G T C C A G T A C T G A G T C C G T A C A T G A T G C A C G T T G A C C G T A C G T A G T C A C T G A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:7
Score:0.54
Offset:6
Orientation:forward strand
Alignment:CACTGCAGSTCAAAAG
------ACWTCAAAGG
 A G T C C T G A A G T C C A G T A C T G A G T C C G T A C A T G A T G C A C G T T G A C C G T A C G T A G T C A C T G A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A T G C C G A T A C G T A G T C C G T A C G T A C G T A C T A G A T C G

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:8
Score:0.54
Offset:6
Orientation:forward strand
Alignment:CACTGCAGSTCAAAAG--
------ACATCAAAGGNA
 A G T C C T G A A G T C C A G T A C T G A G T C C G T A C A T G A T G C A C G T T G A C C G T A C G T A G T C A C T G A C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A A T G C G C T A G C A T A T G C C G T A T C G A C T G A C T A G T C A G T A C G G T C A

PB0083.1_Tcf7_1/Jaspar

Match Rank:9
Score:0.52
Offset:3
Orientation:forward strand
Alignment:CACTGCAGSTCAAAAG----
---TATAGATCAAAGGAAAA
 A G T C C T G A A G T C C A G T A C T G A G T C C G T A C A T G A T G C A C G T T G A C C G T A C G T A G T C A C T G A C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C A T G C T A

HLTF/MA0109.1/Jaspar

Match Rank:10
Score:0.52
Offset:9
Orientation:reverse strand
Alignment:CACTGCAGSTCAAAAG---
---------NNATAAGGNN
 A G T C C T G A A G T C C A G T A C T G A G T C C G T A C A T G A T G C A C G T T G A C C G T A C G T A G T C A C T G A C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T G T C A G C A T C G T A C G T A A C T G A C T G C G A T G C A T