Information for 11-CTRCCACTAGAKG (Motif 13)

A T G C C G A T C T G A G T A C A G T C C G T A G T A C C A G T C G T A A C T G T G C A C A T G A C T G
Reverse Opposite:
A G T C G T A C A C G T A G T C A C G T G C T A A C T G C G A T C T A G A C T G G A C T C G T A T A C G
p-value:1e-11
log p-value:-2.546e+01
Information Content per bp:1.721
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets46.0 +/- 26.1bp
Average Position of motif in Background19.7 +/- 6.5bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:CTRCCACTAGAKG-------
TGGCCACCAGGTGGCACTNT
 A T G C C G A T C T G A G T A C A G T C C G T A G T A C C A G T C G T A A C T G T G C A C A T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CTRCCACTAGAKG------
TGGCCACCAGGGGGCGCTA
 A T G C C G A T C T G A G T A C A G T C C G T A G T A C C A G T C G T A A C T G T G C A C A T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CTRCCACTAGAKG---------
--GCCASCAGGGGGCGCYVNNG
 A T G C C G A T C T G A G T A C A G T C C G T A G T A C C A G T C G T A A C T G T G C A C A T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

NKX2-8/MA0673.1/Jaspar

Match Rank:4
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CTRCCACTAGAKG
---CCACTTGAA-
 A T G C C G A T C T G A G T A C A G T C C G T A G T A C C A G T C G T A A C T G T G C A C A T G A C T G
A C G T A C G T A C G T T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:5
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CTRCCACTAGAKG
--ACCACTTGAA-
 A T G C C G A T C T G A G T A C A G T C C G T A G T A C C A G T C G T A A C T G T G C A C A T G A C T G
A C G T A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:6
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CTRCCACTAGAKG
--NSCACTYVAV-
 A T G C C G A T C T G A G T A C A G T C C G T A G T A C C A G T C G T A A C T G T G C A C A T G A C T G
A C G T A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T

PH0111.1_Nkx2-2/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CTRCCACTAGAKG---
ATAACCACTTGAAAATT
 A C G T A T G C C G A T C T G A G T A C A G T C C G T A G T A C C A G T C G T A A C T G T G C A C A T G A C T G A C G T A C G T A C G T
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:8
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CTRCCACTAGAKG
--RSCACTYRAG-
 A T G C C G A T C T G A G T A C A G T C C G T A G T A C C A G T C G T A A C T G T G C A C A T G A C T G
A C G T A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T

MEF2D/MA0773.1/Jaspar

Match Rank:9
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CTRCCACTAGAKG
ACTATAAATAGA--
 A C G T A T G C C G A T C T G A G T A C A G T C C G T A G T A C C A G T C G T A A C T G T G C A C A T G A C T G
C T G A G A T C G A C T G T C A C G A T G C T A C G T A G C T A A C G T C T G A T C A G G T C A A C G T A C G T

MEF2A/MA0052.3/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CTRCCACTAGAKG
TCTAAAAATAGA--
 A C G T A T G C C G A T C T G A G T A C A G T C C G T A G T A C C A G T C G T A A C T G T G C A C A T G A C T G
C A G T G A T C A G C T G C T A C G T A G C T A C G T A G C T A A G C T G T C A C T A G G T C A A C G T A C G T