Information for 10-TCGCTAATCCCCG (Motif 13)

A C G T A T G C C T A G A G T C A C G T C G T A C G T A A C G T A G T C A T G C A G T C G A T C A T C G
Reverse Opposite:
A T G C C A T G A C T G A T C G A C T G C G T A C G A T A C G T C G T A A C T G A G T C A T C G G T C A
p-value:1e-11
log p-value:-2.554e+01
Information Content per bp:1.839
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets56.0 +/- 27.9bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0139.1_Pitx3/Jaspar

Match Rank:1
Score:0.82
Offset:-2
Orientation:reverse strand
Alignment:--TCGCTAATCCCCG-
GNNAGCTAATCCCCCN
 A C G T A C G T A C G T A T G C C T A G A G T C A C G T C G T A C G T A A C G T A G T C A T G C A G T C G A T C A T C G A C G T
A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T

GSC/MA0648.1/Jaspar

Match Rank:2
Score:0.79
Offset:2
Orientation:forward strand
Alignment:TCGCTAATCCCCG
--GCTAATCCCC-
 A C G T A T G C C T A G A G T C A C G T C G T A C G T A A C G T A G T C A T G C A G T C G A T C A T C G
A C G T A C G T T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C A C G T

PH0035.1_Gsc/Jaspar

Match Rank:3
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--TCGCTAATCCCCG--
AATCGTTAATCCCTTTA
 A C G T A C G T A C G T A T G C C T A G A G T C A C G T C G T A C G T A A C G T A G T C A T G C A G T C G A T C A T C G A C G T A C G T
G C T A T C G A G C A T G T A C T C A G G A C T C G A T C T G A C G T A A C G T G A T C A G T C A T G C A G C T C A G T G C A T T G A C

PH0015.1_Crx/Jaspar

Match Rank:4
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:TCGCTAATCCCCG---
AGGCTAATCCCCAANG
 A C G T A T G C C T A G A G T C A C G T C G T A C G T A A C G T A G T C A T G C A G T C G A T C A T C G A C G T A C G T A C G T
G T C A T A C G T C A G G A T C C G A T C G T A C G T A A C G T A G T C A G T C A T G C A T G C G C T A G C T A T G A C T C A G

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:5
Score:0.77
Offset:2
Orientation:forward strand
Alignment:TCGCTAATCCCCG
--GCTAATCC---
 A C G T A T G C C T A G A G T C A C G T C G T A C G T A A C G T A G T C A T G C A G T C G A T C A T C G
A C G T A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T A C G T

GSC2/MA0891.1/Jaspar

Match Rank:6
Score:0.76
Offset:2
Orientation:forward strand
Alignment:TCGCTAATCCCCG
--CCTAATCCGC-
 A C G T A T G C C T A G A G T C A C G T C G T A C G T A A C G T A G T C A T G C A G T C G A T C A T C G
A C G T A C G T T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C A C G T

PITX3/MA0714.1/Jaspar

Match Rank:7
Score:0.76
Offset:2
Orientation:forward strand
Alignment:TCGCTAATCCCCG
--CTTAATCCC--
 A C G T A T G C C T A G A G T C A C G T C G T A C G T A A C G T A G T C A T G C A G T C G A T C A T C G
A C G T A C G T T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C A C G T A C G T

PH0123.1_Obox3/Jaspar

Match Rank:8
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-TCGCTAATCCCCG---
ATAGTTAATCCCCCNNA
 A C G T A C G T A T G C C T A G A G T C A C G T C G T A C G T A A C G T A G T C A T G C A G T C G A T C A T C G A C G T A C G T A C G T
C T G A C A G T G C T A C A T G G C A T G C A T C G T A G T C A C A G T G T A C G A T C G A T C G A T C A T G C A G C T T A G C C G T A

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:9
Score:0.75
Offset:2
Orientation:forward strand
Alignment:TCGCTAATCCCCG
--NYTAATCCYB-
 A C G T A T G C C T A G A G T C A C G T C G T A C G T A A C G T A G T C A T G C A G T C G A T C A T C G
A C G T A C G T A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T A C G T

PH0137.1_Pitx1/Jaspar

Match Rank:10
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-TCGCTAATCCCCG---
NTTGTTAATCCCTCTNN
 A C G T A C G T A T G C C T A G A G T C A C G T C G T A C G T A A C G T A G T C A T G C A G T C G A T C A T C G A C G T A C G T A C G T
C G T A C A G T G A C T C A T G G A C T C G A T C G T A C G T A A C G T G A T C A G T C A G T C G A C T A G T C A G C T T G C A C T G A