Information for 10-GGTTCAAGCTTGA (Motif 9)

C A T G A T C G C A G T A G C T A G T C G T C A T C G A A T C G T A G C A C G T A C G T A C T G T C G A
Reverse Opposite:
A G C T A G T C G T C A T G C A A T C G A T G C A C G T C A G T A C T G C T G A G T C A T A G C G A T C
p-value:1e-11
log p-value:-2.645e+01
Information Content per bp:1.703
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.84%
Number of Background Sequences with motif53.1
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets61.0 +/- 19.9bp
Average Position of motif in Background52.5 +/- 27.4bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax6/MA0069.1/Jaspar

Match Rank:1
Score:0.66
Offset:2
Orientation:forward strand
Alignment:GGTTCAAGCTTGA---
--TTCACGCATGAGTT
 C A T G A T C G C A G T A G C T A G T C G T C A T C G A A T C G T A G C A C G T A C G T A C T G T C G A A C G T A C G T A C G T
A C G T A C G T A C G T G A C T G A T C G T C A G A T C C A T G A T G C C G T A A G C T A T C G C T G A T A C G A G C T C A G T

ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GGTTCAAGCTTGA
BCNGGTTCTAGANCN-
 A C G T A C G T A C G T C A T G A T C G C A G T A G C T A G T C G T C A T C G A A T C G T A G C A C G T A C G T A C T G T C G A
A G C T T G A C C T A G C A T G C T A G G A C T A C G T A G T C A G C T C T G A T A C G T C G A C G A T A G T C G A C T A C G T

PB0090.1_Zbtb12_1/Jaspar

Match Rank:3
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GGTTCAAGCTTGA
CTAAGGTTCTAGATCAC
 A C G T A C G T A C G T A C G T C A T G A T C G C A G T A G C T A G T C G T C A T C G A A T C G T A G C A C G T A C G T A C T G T C G A
A T G C A C G T G C T A T C G A A C T G C T A G C G A T C G A T A G T C A G C T T C G A C T A G T C G A G C A T A G T C T G C A A G T C

PAX1/MA0779.1/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GGTTCAAGCTTGA-----
-CGTCACGCATGACTGCA
 C A T G A T C G C A G T A G C T A G T C G T C A T C G A A T C G T A G C A C G T A C G T A C T G T C G A A C G T A C G T A C G T A C G T A C G T
A C G T A T G C C A T G G C A T G A T C T G C A G A T C C A T G A T G C G C T A G A C T A T C G T C G A T A G C G A C T C A T G T G A C G T C A

Nr2e3/MA0164.1/Jaspar

Match Rank:5
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:GGTTCAAGCTTGA
-----AAGCTTG-
 C A T G A T C G C A G T A G C T A G T C G T C A T C G A A T C G T A G C A C G T A C G T A C T G T C G A
A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T

PAX9/MA0781.1/Jaspar

Match Rank:6
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GGTTCAAGCTTGA-----
-CGTCACGCATGACTGCA
 C A T G A T C G C A G T A G C T A G T C G T C A T C G A A T C G T A G C A C G T A C G T A C T G T C G A A C G T A C G T A C G T A C G T A C G T
A C G T A T G C A C T G G C A T A G T C T G C A A G T C A C T G A T G C G C T A G A C T A T C G C T G A T A G C G A C T C A T G T G A C G T C A

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:7
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GGTTCAAGCTTGA
AGGTCAAGGTCA-
 C A T G A T C G C A G T A G C T A G T C G T C A T C G A A T C G T A G C A C G T A C G T A C T G T C G A
T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GGTTCAAGCTTGA----
-NGTCACGCTTGGCTGC
 C A T G A T C G C A G T A G C T A G T C G T C A T C G A A T C G T A G C A C G T A C G T A C T G T C G A A C G T A C G T A C G T A C G T
A C G T C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:9
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GGTTCAAGCTTGA----
--GTCATGCHTGRCTGS
 C A T G A T C G C A G T A G C T A G T C G T C A T C G A A T C G T A G C A C G T A C G T A C T G T C G A A C G T A C G T A C G T A C G T
A C G T A C G T A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

PB0030.1_Hnf4a_1/Jaspar

Match Rank:10
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------GGTTCAAGCTTGA
CTCCAGGGGTCAATTGA--
 A C G T A C G T A C G T A C G T A C G T A C G T C A T G A T C G C A G T A G C T A G T C G T C A T C G A A T C G T A G C A C G T A C G T A C T G T C G A
A T G C C A G T A G C T T G A C G T C A T C A G C T A G A C T G A C T G A C G T A G T C T G C A G T C A A G C T G C A T C A T G T G C A A C G T A C G T