Information for 5-CCCAGMGAGCGTGACC (Motif 6)

A G T C A G T C A T G C G C T A A T C G G T A C C T A G G T C A A T C G A G T C A C T G A C G T A C T G G T C A A G T C A G T C
Reverse Opposite:
A C T G A C T G A C G T A G T C C G T A G T A C A C T G A T G C A C G T A G T C C A T G A T G C C A G T A T C G T C A G A C T G
p-value:1e-14
log p-value:-3.317e+01
Information Content per bp:1.777
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.99%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets41.3 +/- 14.4bp
Average Position of motif in Background26.0 +/- 12.2bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:CCCAGMGAGCGTGACC
-TCAGNGAGCGTGAC-
 A G T C A G T C A T G C G C T A A T C G G T A C C T A G G T C A A T C G A G T C A C T G A C G T A C T G G T C A A G T C A G T C
A C G T A C G T T A G C T C G A A T C G T A C G T C A G C T G A A T C G A G T C C T A G G A C T C T A G C T G A T G A C A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:2
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:CCCAGMGAGCGTGACC-
-----TGACCTTGACCT
 A G T C A G T C A T G C G C T A A T C G G T A C C T A G G T C A A T C G A G T C A C T G A C G T A C T G G T C A A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:3
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:CCCAGMGAGCGTGACC-
-----TGACCTTGACCT
 A G T C A G T C A T G C G C T A A T C G G T A C C T A G G T C A A T C G A G T C A C T G A C G T A C T G G T C A A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T

Pax2/MA0067.1/Jaspar

Match Rank:4
Score:0.61
Offset:8
Orientation:reverse strand
Alignment:CCCAGMGAGCGTGACC
--------NCGTGACN
 A G T C A G T C A T G C G C T A A T C G G T A C C T A G G T C A A T C G A G T C A C T G A C G T A C T G G T C A A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.61
Offset:11
Orientation:reverse strand
Alignment:CCCAGMGAGCGTGACC-
-----------TGACCT
 A G T C A G T C A T G C G C T A A T C G G T A C C T A G G T C A A T C G A G T C A C T G A C G T A C T G G T C A A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T

NR4A2/MA0160.1/Jaspar

Match Rank:6
Score:0.59
Offset:10
Orientation:reverse strand
Alignment:CCCAGMGAGCGTGACC--
----------GTGACCTT
 A G T C A G T C A T G C G C T A A T C G G T A C C T A G G T C A A T C G A G T C A C T G A C G T A C T G G T C A A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T

NR2F1/MA0017.2/Jaspar

Match Rank:7
Score:0.59
Offset:7
Orientation:reverse strand
Alignment:CCCAGMGAGCGTGACC----
-------CNNTTGACCTTTG
 A G T C A G T C A T G C G C T A A T C G G T A C C T A G G T C A A T C G A G T C A C T G A C G T A C T G G T C A A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:8
Score:0.59
Offset:11
Orientation:reverse strand
Alignment:CCCAGMGAGCGTGACC---
-----------TGACCYCT
 A G T C A G T C A T G C G C T A A T C G G T A C C T A G G T C A A T C G A G T C A C T G A C G T A C T G G T C A A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:9
Score:0.58
Offset:11
Orientation:reverse strand
Alignment:CCCAGMGAGCGTGACC---
-----------TGACCTYA
 A G T C A G T C A T G C G C T A A T C G G T A C C T A G G T C A A T C G A G T C A C T G A C G T A C T G G T C A A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

Hes1/MA1099.1/Jaspar

Match Rank:10
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:CCCAGMGAGCGTGACC
-----NNCGCGTGNN-
 A G T C A G T C A T G C G C T A A T C G G T A C C T A G G T C A A T C G A G T C A C T G A C G T A C T G G T C A A G T C A G T C
A C G T A C G T A C G T A C G T A C G T C A T G C T G A T G A C C T A G A G T C T C A G G A C T C T A G A T G C A T G C A C G T