Information for 4-TGWGCAGCCMAGCAAA (Motif 3)

A C G T A T C G G C T A A C T G T G A C G T C A C T A G A T G C A G T C T G C A C G T A T A C G A T G C C T G A C T G A C T G A
Reverse Opposite:
A G C T G A C T A G C T A T C G A T G C G C A T A C G T T C A G T A C G A G T C A C G T A C T G T G A C C G A T A T G C T C G A
p-value:1e-20
log p-value:-4.633e+01
Information Content per bp:1.636
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif5.10%
Number of Background Sequences with motif305.1
Percentage of Background Sequences with motif0.64%
Average Position of motif in Targets37.7 +/- 19.5bp
Average Position of motif in Background48.9 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX5/MA0014.2/Jaspar

Match Rank:1
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TGWGCAGCCMAGCAAA--
GAGGGCAGCCAAGCGTGAC
 A C G T A C G T A T C G G C T A A C T G T G A C G T C A C T A G A T G C A G T C T G C A C G T A T A C G A T G C C T G A C T G A C T G A A C G T A C G T
T C A G C G T A T C A G C T A G A C T G G A T C C T G A T A C G A G T C T A G C T C G A C T G A A T C G A G T C C T A G C A G T C T A G C T G A G T A C

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:TGWGCAGCCMAGCAAA--
---SCAGYCADGCATGAC
 A C G T A T C G G C T A A C T G T G A C G T C A C T A G A T G C A G T C T G C A C G T A T A C G A T G C C T G A C T G A C T G A A C G T A C G T
A C G T A C G T A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:3
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TGWGCAGCCMAGCAAA--
NGTGTTCAVTSAAGCGKAAA
 A C G T A C G T A C G T A T C G G C T A A C T G T G A C G T C A C T A G A T G C A G T C T G C A C G T A T A C G A T G C C T G A C T G A C T G A A C G T A C G T
A G C T T A C G C G A T T C A G A G C T A C G T G A T C C T G A T A G C A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G C T G A G T C A T C G A

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.58
Offset:3
Orientation:forward strand
Alignment:TGWGCAGCCMAGCAAA---
---GCAGCCAAGCGTGACN
 A C G T A T C G G C T A A C T G T G A C G T C A C T A G A T G C A G T C T G C A C G T A T A C G A T G C C T G A C T G A C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.54
Offset:4
Orientation:forward strand
Alignment:TGWGCAGCCMAGCAAA
----CAGCC-------
 A C G T A T C G G C T A A C T G T G A C G T C A C T A G A T G C A G T C T G C A C G T A T A C G A T G C C T G A C T G A C T G A
A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:6
Score:0.52
Offset:2
Orientation:forward strand
Alignment:TGWGCAGCCMAGCAAA
--ACTAGCCAATCA--
 A C G T A T C G G C T A A C T G T G A C G T C A C T A G A T G C A G T C T G C A C G T A T A C G A T G C C T G A C T G A C T G A
A C G T A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:TGWGCAGCCMAGCAAA
---BCAGACWA-----
 A C G T A T C G G C T A A C T G T G A C G T C A C T A G A T G C A G T C T G C A C G T A T A C G A T G C C T G A C T G A C T G A
A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:8
Score:0.47
Offset:2
Orientation:reverse strand
Alignment:TGWGCAGCCMAGCAAA
--NGAAGC--------
 A C G T A T C G G C T A A C T G T G A C G T C A C T A G A T G C A G T C T G C A C G T A T A C G A T G C C T G A C T G A C T G A
A C G T A C G T T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.47
Offset:5
Orientation:reverse strand
Alignment:TGWGCAGCCMAGCAAA
-----TGCCCAGNHW-
 A C G T A T C G G C T A A C T G T G A C G T C A C T A G A T G C A G T C T G C A C G T A T A C G A T G C C T G A C T G A C T G A
A C G T A C G T A C G T A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:10
Score:0.46
Offset:3
Orientation:forward strand
Alignment:TGWGCAGCCMAGCAAA
---CGTGCCAAG----
 A C G T A T C G G C T A A C T G T G A C G T C A C T A G A T G C A G T C T G C A C G T A T A C G A T G C C T G A C T G A C T G A
A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T