Information for 20-GGCCWTSAAWAGM (Motif 25)

A C T G C T A G A G T C A G T C C G T A A C G T A T C G C G T A C G T A C G T A C G T A A C T G G T C A
Reverse Opposite:
C A G T A G T C A C G T C G A T A C G T A C G T A T G C C G T A C G A T A C T G A C T G A G T C A G T C
p-value:1e-8
log p-value:-1.895e+01
Information Content per bp:1.874
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif5.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets48.6 +/- 19.0bp
Average Position of motif in Background24.3 +/- 6.6bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0056.1_Hoxa9/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GGCCWTSAAWAGM--
ACGGCCATAAAATTAAT
 A C G T A C G T A C T G C T A G A G T C A G T C C G T A A C G T A T C G C G T A C G T A C G T A C G T A A C T G G T C A A C G T A C G T
C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T

Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer

Match Rank:2
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GGCCWTSAAWAGM
-KCCAAAAATAGC
 A C T G C T A G A G T C A G T C C G T A A C G T A T C G C G T A C G T A C G T A C G T A A C T G G T C A
A C G T A C T G G T A C G A T C G C T A C G T A C T G A C G T A C G T A G C A T C T G A T C A G G T A C

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:3
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GGCCWTSAAWAGM
TGACCTTGAN----
 A C G T A C T G C T A G A G T C A G T C C G T A A C G T A T C G C G T A C G T A C G T A C G T A A C T G G T C A
G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A A C G T A C G T A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GGCCWTSAAWAGM
GGCCATTAAC---
 A C T G C T A G A G T C A G T C C G T A A C G T A T C G C G T A C G T A C G T A C G T A A C T G G T C A
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T A C G T A C G T

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:5
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GGCCWTSAAWAGM
-GCTAAAAATAGC
 A C T G C T A G A G T C A G T C C G T A A C G T A T C G C G T A C G T A C G T A C G T A A C T G G T C A
A C G T A C T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G C A T C T G A T C A G G T A C

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:6
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GGCCWTSAAWAGM
NGCAATTAAA---
 A C T G C T A G A G T C A G T C C G T A A C G T A T C G C G T A C G T A C G T A C G T A A C T G G T C A
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T A C G T A C G T

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GGCCWTSAAWAGM
--CCAAAAATAG-
 A C T G C T A G A G T C A G T C C G T A A C G T A T C G C G T A C G T A C G T A C G T A A C T G G T C A
A C G T A C G T G T A C G A C T C G T A C T G A T C G A C G T A G C T A C A G T C T G A T A C G A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:8
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GGCCWTSAAWAGM
TGACCTTGAV----
 A C G T A C T G C T A G A G T C A G T C C G T A A C G T A T C G C G T A C G T A C G T A C G T A A C T G G T C A
G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A A C G T A C G T A C G T A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:9
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GGCCWTSAAWAGM-
--CCTTTTATAGNC
 A C T G C T A G A G T C A G T C C G T A A C G T A T C G C G T A C G T A C G T A C G T A A C T G G T C A A C G T
A C G T A C G T A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

MEF2B/MA0660.1/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GGCCWTSAAWAGM
-GCTATAAATAGC
 A C T G C T A G A G T C A G T C C G T A A C G T A T C G C G T A C G T A C G T A C G T A A C T G G T C A
A C G T C T A G G T A C A G C T C G T A G C A T C G T A G C T A C G T A A C G T G C T A T C A G G T A C