Information for 9-CCTGCAGACA (Motif 19)

T G A C T A G C A G C T T C A G T G A C G C T A T C A G C G T A T A G C C G T A
Reverse Opposite:
G C A T A T C G G C A T A G T C C G A T A C T G A G T C T C G A A T C G A C T G
p-value:1e-9
log p-value:-2.147e+01
Information Content per bp:1.533
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif4.11%
Number of Background Sequences with motif479.6
Percentage of Background Sequences with motif1.01%
Average Position of motif in Targets50.3 +/- 23.8bp
Average Position of motif in Background50.6 +/- 33.1bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:CCTGCAGACA---
---CCAGACRSVB
 T G A C T A G C A G C T T C A G T G A C G C T A T C A G C G T A T A G C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:CCTGCAGACA-
---CCAGACAG
 T G A C T A G C A G C T T C A G T G A C G C T A T C A G C G T A T A G C C G T A A C G T
A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

PB0130.1_Gm397_2/Jaspar

Match Rank:3
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CCTGCAGACA-----
AGCGGCACACACGCAA
 A C G T T G A C T A G C A G C T T C A G T G A C G C T A T C A G C G T A T A G C C G T A A C G T A C G T A C G T A C G T A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:4
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CCTGCAGACA----
ATTTGCATACAATGG
 A C G T T G A C T A G C A G C T T C A G T G A C G C T A T C A G C G T A T A G C C G T A A C G T A C G T A C G T A C G T
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:CCTGCAGACA-
---BCAGACWA
 T G A C T A G C A G C T T C A G T G A C G C T A T C A G C G T A T A G C C G T A A C G T
A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

PB0208.1_Zscan4_2/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CCTGCAGACA-----
CGAAGCACACAAAATA
 A C G T T G A C T A G C A G C T T C A G T G A C G C T A T C A G C G T A T A G C C G T A A C G T A C G T A C G T A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:7
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CCTGCAGACA--
NNNVCTGWGYAAACASN
 A C G T A C G T A C G T A C G T A C G T T G A C T A G C A G C T T C A G T G A C G C T A T C A G C G T A T A G C C G T A A C G T A C G T
A T G C C T G A A T C G T A C G A G T C C G A T T C A G C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A T A C G C T G A

Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer

Match Rank:8
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CCTGCAGACA
--DGTAAACA
 T G A C T A G C A G C T T C A G T G A C G C T A T C A G C G T A T A G C C G T A
A C G T A C G T C G A T C T A G A C G T G T C A C G T A C G T A A G T C C G T A

Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer

Match Rank:9
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CCTGCAGACA-
---GTAAACAG
 T G A C T A G C A G C T T C A G T G A C G C T A T C A G C G T A T A G C C G T A A C G T
A C G T A C G T A C G T C T A G C A G T G T C A C G T A C T G A A G T C C G T A T A C G

FOXP3/MA0850.1/Jaspar

Match Rank:10
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CCTGCAGACA
---GTAAACA
 T G A C T A G C A G C T T C A G T G A C G C T A T C A G C G T A T A G C C G T A
A C G T A C G T A C G T C T A G G A C T C G T A C T G A T C G A A G T C C T G A