Motif 18

Information for 8-TTTGCATAAG (Motif 18)

Reverse Opposite:

p-value:	1e-9
log p-value:	-2.178e+01
Information Content per bp:	1.680
Number of Target Sequences with motif	47.0
Percentage of Target Sequences with motif	6.66%
Number of Background Sequences with motif	1108.6
Percentage of Background Sequences with motif	2.34%
Average Position of motif in Targets	46.7 +/- 27.6bp
Average Position of motif in Background	48.8 +/- 30.8bp
Strand Bias (log2 ratio + to - strand density)	-0.5
Multiplicity (# of sites on avg that occur together)	1.02
Motif File:	file (matrix) reverse opposite
SVG Files for Logos:	forward logo reverse opposite

Matches to Known Motifs

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:	1
Score:	0.89
Offset:	-1
Orientation:	forward strand
Alignment:	-TTTGCATAAG ATTTGCATAA-

POU2F2/MA0507.1/Jaspar

Match Rank:	2
Score:	0.84
Offset:	-4
Orientation:	forward strand
Alignment:	----TTTGCATAAG TTCATTTGCATAT-

POU5F1B/MA0792.1/Jaspar

Match Rank:	3
Score:	0.84
Offset:	-1
Orientation:	reverse strand
Alignment:	-TTTGCATAAG ATTTGCATA--

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:	4
Score:	0.84
Offset:	-1
Orientation:	reverse strand
Alignment:	-TTTGCATAAG ATTTGCATAT-

POU2F1/MA0785.1/Jaspar

Match Rank:	5
Score:	0.84
Offset:	-2
Orientation:	reverse strand
Alignment:	--TTTGCATAAG AATTTGCATANT

POU3F1/MA0786.1/Jaspar

Match Rank:	6
Score:	0.83
Offset:	-3
Orientation:	reverse strand
Alignment:	---TTTGCATAAG TAATTTGCATAA-

POU3F4/MA0789.1/Jaspar

Match Rank:	7
Score:	0.82
Offset:	-1
Orientation:	reverse strand
Alignment:	-TTTGCATAAG ATTTGCATA--

Pou2f3/MA0627.1/Jaspar

Match Rank:	8
Score:	0.82
Offset:	-5
Orientation:	reverse strand
Alignment:	-----TTTGCATAAG- TNTAATTTGCATACNA

PH0145.1_Pou2f3/Jaspar

Match Rank:	9
Score:	0.82
Offset:	-5
Orientation:	reverse strand
Alignment:	-----TTTGCATAAG- TNTAATTTGCATACNA

PH0144.1_Pou2f2/Jaspar

Match Rank:	10
Score:	0.82
Offset:	-5
Orientation:	reverse strand
Alignment:	-----TTTGCATAAG- TNTAATTTGCATANNN